SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2872

Length: 653 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2872

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene370	7/9

Source	Descriptions	Term	Type	Identity
AutoFact	P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gb\|AAY25445.1\| At1g72040 [Arabidopsis thaliana] dbj\|BAF00702.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE35266.1\| P-loop containing nucleoside triphosphate hy	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	72%
Blast2go	deoxycytidine kinase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Deoxycytidine kinase.	EC:2.7.1.74	-	0.0	82%

Source	KEGGs	Term	Type	Identity
Blast2go	Purine metabolism	00230		82%
Blast2go	Pyrimidine metabolism	00240		82%
Blast2go	Metabolic pathways	01100		82%
Blast2go	Transferases, Transferring phosphorous-containing groups, Phosphotransferases with an alcohol group as acceptor.	EC:2.7.1.-	-	82%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	82%
Blast2go	Lipopolysaccharide biosynthesis	00540	82%
Blast2go	Nicotinate and nicotinamide metabolism	00760	82%
Blast2go	Metabolic pathways	01100	82%

Source	GOs	Term	Type	Identity
Blast2go	nucleobase-containing compound metabolic process	GO:0006139	Biological Process	82%
Blast2go	phosphorylation	GO:0016310	Biological Process	82%
Blast2go	deoxycytidine kinase activity	GO:0004137	Molecular Function	82%
Blast2go	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	0.0	-
Sma3	Deoxynucleoside kinase	IPR002624	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
286	83	16			0.994512
288	83			16	0.994512
289	83	16			0.994512
291	83			16	0.994512
292	83		16		0.994512
293	16			83	0.994512
296		83		16	0.994512
300	83			16	0.994512
302		16	83		0.994512
304		16		83	0.994512
305			83	16	0.994512
306		16	83		0.994512
319		20		80	0.995493
321		80		20	0.995493
322	80	20			0.995493
324	80			20	0.995493
325	80		20		0.995493
327	80	20			0.995493
328	80	20			0.995493
329			80	20	0.995493
330	80			20	0.995493
587	66	33			0.997452
590	33			66	0.997452
591			33	66	0.997452
592	66			33	0.997452
593	66		33		0.997452
596		66		33	0.997452
597		66	33		0.997452
598	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain