SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2489

Length: 1253 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2489

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26184	46/49

Source	Descriptions	Term	Type	Identity
AutoFact	Ras-related protein Rab11A n=5 Tax=Papilionoideae RepID=RB11A_LOTJA	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	ras-related protein rab11a	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	regulation of pollen tube growth	GO:0080092	Biological Process	88%
Blast2go	kinase binding	GO:0019900	Molecular Function	88%
Blast2go	exocytic vesicle	GO:0070382	Cellular Component	88%
Blast2go	apical part of cell	GO:0045177	Cellular Component	88%
Blast2go	pollen tube tip	GO:0090404	Biological Process	88%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3		IPR015595	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWW5

Fln msg:

Fln protein: MAGSYGDYGPKIDYVFKIVLIGDSAVGKSQLLSRFARNEFSLDSKATIGVEFQTRTLMIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHVSRWLEELRGHADSNIIIMLIGNKCDLGNLRAVPIDDAKEFAQREGLFFLETSALEAINVESAFLTVLTEIYRIISKKALIANDDQGNGNSALLTGTKLNVPVEVQEVSTNKNYCCSS*

Protein Length: 225

Fln nts: TTCGGGCTTTTGGATCCATTATTTGGGACAAATTTGACAGAATTCTGAGATTCACACCTTTTGAAGGAGTTGGGTAAATTCAAGGCTTATTGCAATCAGCTCAATACCGGATTTGCAGGCTTTTCTGCCGAATTTGATAGAATTTGGTTTCGGTGTCTGGCCAATCACGCGCAGAGCCCTGCGGTTGTGTTTTCGGTAGTGTTTTAAAGGGGTATTGACTTACACGAAAGAGAATGCGGCAGAATTTAGAGAAAGA_-_ATGGCTGGCTCATATGGAGATTACGGTCCAAAAATAGACTATGTGTTTAAGATTGTTCTGATTGGTGATTCCGCTGTTGGTAAGTCACAGCTGCTTTCGAGGTTTGCGAGGAATGAGTTCAGCTTGGATTCAAAGGCCACCATAGGAGTTGAGTTCCAGACCAGGACTCTTATGATTGATCATAAAACAGTCAAGGCACAGATATGGGATACTGCTGGGCAAGAGAGGTACAGAGCAGTAACAAGTGCTTACTATCGGGGTGCTGTTGGGGCTATGCTGGTATATGACATAACTAAGCGACAGACATTTGATCATGTGTCCCGTTGGCTCGAGGAGCTGAGAGGCCATGCTGACAGTAATATTATTATTATGCTCATAGGCAACAAATGTGATCTTGGTAACTTGCGTGCAGTTCCGATAGATGATGCAAAAGAATTTGCTCAGAGGGAAGGTTTGTTTTTCTTGGAGACTTCTGCACTCGAGGCAATTAATGTAGAAAGTGCATTTTTAACTGTTTTGACAGAAATCTACAGGATAATCAGCAAAAAGGCCCTCATTGCAAATGATGATCAAGGAAATGGAAATTCAGCGTTGTTAACAGGCACCAAACTTAATGTTCCCGTGGAAGTGCAGGAAGTCTCAACGAACAAGAATTACTGTTGTTCATCATGA___TAACTTGTTGATTTGGTATATCTTTTCCTTTTAATGGTCTCAGGTATTCATTATTGGTGAAAATATAAAGGAGTTGCATTTCCTGTTCTCTTAGCAAGGACTTTTGCAATTAGGATAGACCCCTTCTTGACCTTGTAATCTGGACTCGCTTGAGGCCAGTATTTTGCTAAGTGGATTTTAGGTATATGGGGTTATCAGGGTCTATTGATTTCGTATTTTATGACCTTTTATGAGCTGCTGAAACACATATTAGAGAATAACTGAAGAGATCTCAGATCTCTCATCCGTTGCTTGATATACTTCCTGTATTTTGGAATAATTTTTT

Fln Alignment:

Contig2489___MAGSYGDYGPKIDYVFKIVLIGDSAVGKSQLLSRFARNEFSLDSKATIGVEFQTRTLMIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHVSRWLEELRGHADSNIIIMLIGNKCDLGNLRAVPIDDAKEFAQREGLFFLETSALEAINVESAFLTVLTEIYRIISKKALIANDDQGNGNSALLTGTKLNVPVEVQEVSTNKNYCCSS
A9NWW5_______________MAGSYGDYGPRIDYVFKIVLIGDSAVGKSQLLARFARNEFSLDSKATIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHVARWLEELRGHADNNIVIMLIGNKCDLGNLRAVPIEDAREFAQREGLFFLETSALEAINVESAFLTVLTDIYRIISKKALIANDDQGNGNSALLTGTKLVVPGEEQDVSTNNKYCCSS

SNPs (tot: 119)

Position	A %	C %	G %	T %	Probability
87			25	75	0.996473
89	75	25			0.996473
90			25	75	0.996473
93	25	75			0.996473
94	75	25			0.996473
95	75	25			0.996473
97		75		25	0.996473
98	75		25		0.996473
103	75		25		0.996473
104	75			25	0.996473
105		25		75	0.996473
110	25		75		0.996473
123		20		80	0.995493
124			20	80	0.995493
133			80	20	0.995493
134	80			20	0.995493
135	80		20		0.995493
136			20	80	0.995493
137		20		80	0.995493
140	80			20	0.995493
141		20		80	0.995493
144			80	20	0.995493
145	80	20			0.995493
257	85	14			0.993533
259	85	14			0.993533
261	85			14	0.993533
262	85		14		0.993533
264		14	85		0.993533
265	85	14			0.993533
266	85			14	0.993533
273			85	14	0.993533
275	14			85	0.993533
279	85	14			0.993533
280	14			85	0.993533
290		14	85		0.993533
294		85	14		0.993533
295	83			16	0.994512
296	83		16		0.994512
298	83	16			0.994512
299	83	16			0.994512
301	83			16	0.994512
303	83		16		0.994512
306	83		16		0.994512
310		16	83		0.994512
312	16		83		0.994512
484		12		87	0.992554
512	90	10			0.90298
515		10	90		0.90298
516		90	10		0.90298
518			10	90	0.90298
522	90	10			0.90298
525			88	11	0.923564
528		11	88		0.923564
531		88		11	0.923564
532		11		88	0.923564
533	11		88		0.923564
534		11		88	0.923564
536		11	88		0.923564
537	11		88		0.923564
619		12		87	0.992554
621	87			12	0.992554
626	87		12		0.992554
628		12		87	0.992554
629	87	12			0.992554
632	85		14		0.993533
633		14		85	0.993533
635	83		16		0.994512
637		16		83	0.994512
650	83			16	0.994512
651	83			16	0.994512
654	80		20		0.995493
655	80	20			0.995493
880	86			13	0.999973
881	86	13			0.999973
886	86	13			0.999973
900	82	11		5	0.999919
904		88		11	0.999952
906	5	11	82		0.999919
907		11	88		0.999952
908	88			11	0.999952
909	88			11	0.999952
911			11	88	0.999952
914		88		11	0.999937
915	77	11	11		0.999842
916	88			11	0.999937
920	83	11		5	0.999887
922	88			11	0.999937
923	83			11	0.999887
925	88		11		0.999937
926	88	11			0.999937
932	11		88		0.999937
978	86		13		1.0
980		9		90	0.999842
981		9	86		0.999642
982			90	9	0.999842
984		90	9		0.999842
985	4		9	86	0.999642
987	86			9	0.999642
989		4	86	9	0.999642
990	4	9		86	0.999642
992		9		90	0.999842
998	92	8			0.999718
999			8	92	0.999718
1001		8	92		0.999718
1007	91	8			0.999766
1008	91	8			0.999766
1010	91			8	0.999766
1011			8	91	0.999766
1012	91		8		0.999766
1013	91	8			0.999766
1014	91			8	0.999766
1016			91	8	0.999766
1017	91	8			0.999807
1018	8		91		0.999807
1019		8		91	0.999807
1021		8	91		0.999807
1022	8	91			0.999807
1054	70	30			1.0
1168	64			35	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
616	627	TAT TAT TAT TAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain