SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2097

Length: 1757 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2097

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13806	166/173
SustainPine v2.0	sp_v2.0_unigene65052	5/173

Source	Descriptions	Term	Type	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] emb\|CAB38899.1\| putative protein [Arabidopsis thaliana] emb\|CAB80649.1\| putative protein [Arabidopsis thaliana] gb\|AEE87129.1\| uncharacterized protein [Arabidopsis thaliana]	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	uncharacterized protein	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	70%
Blast2go	cytoplasm	GO:0005737	Cellular Component	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLN8

Fln msg:

Fln protein: MQEEANSPAKTRPGGHSTRDLLTWSSESSPHTPAQTHQSNGTPRLPAGGISSISLTDELTPEQADSLLKRRPCSDSKWREMTGSGIFNVGNSNDESDSALGNSTPDQPSLRPYQQGAGIISQISFAAEESVSPKKPISIAEVAKQKELSGNLKMADDTNVRRQISEAKSKELSGHDIFSPPPELPPKSLNRSLERKEEPKESGEPAQRNIRTSVKVSNPAGGHSNIIFGQETPVKTSKRVHDQKVAELTGNNIFKGDHLTNSAEKPLSIAKLKEMSGSDIFADGKVENRDCLGGIRKPPGGESSISLV*

Protein Length: 310

Fln nts: CTCCAAAAGCCATTGATGGCATTTGAGGCTTTCACTATCCAATCCAGGGCAGGGCAGGCCAGCCCACACCATTACTGGAATCGGGGTGCTTTGTGACACGCGGATTTGGAGGCGGGGATAAATGACCTCTATCAGTGGGGTTATTTTATTTATGAACCCATAAGACAAAGTTAGTTGGCCCACCAACTCTATGAAAATTTGAATCACCTGGGTGATCTACAGATGACGTTGGCACCAACCAGGCTGTCCATGTCAGCCGTTGGAACCAGGGAAAAGTGGTAGGTAATTGTGCAGGTATAACGTCGTGACCTTGGCTGTCACTCAATTTTGCTTGGGAATAAGGAAGAAGAAGAAGAAGGAAGAGTGCGAGCAGCGAAA_-_ATGCAGGAAGAAGCAAACAGCCCGGCAAAAACAAGGCCCGGAGGCCATTCGACTCGCGATCTCCTCACCTGGTCGTCGGAAAGCTCTCCGCACACTCCAGCTCAAACTCATCAGAGCAATGGAACTCCGCGTCTGCCTGCAGGTGGAATCAGCTCGATTTCCTTAACTGACGAACTCACTCCTGAACAGGCGGATTCCTTATTAAAGAGGAGGCCATGTTCTGATTCAAAGTGGAGAGAGATGACTGGGAGTGGAATTTTCAATGTTGGGAATTCAAATGATGAATCTGATTCTGCACTTGGCAACTCTACTCCAGATCAACCTAGTTTACGACCCTATCAGCAAGGTGCAGGAATAATAAGTCAAATATCATTTGCTGCCGAAGAAAGTGTCTCCCCCAAGAAGCCTATTTCTATAGCAGAGGTAGCAAAGCAAAAGGAACTTAGTGGAAATCTAAAGATGGCTGATGATACGAATGTGAGGAGGCAAATCTCCGAGGCTAAATCAAAGGAGCTTAGTGGACATGATATATTTTCTCCCCCACCAGAGTTGCCGCCTAAATCTTTAAATCGCAGTCTGGAACGTAAGGAAGAGCCCAAGGAAAGTGGAGAGCCAGCACAGCGAAACATCCGCACATCTGTAAAGGTCTCAAATCCTGCAGGAGGTCATAGTAATATTATATTTGGTCAAGAGACTCCAGTAAAGACATCAAAAAGAGTACATGATCAGAAGGTGGCGGAATTGACGGGTAACAACATTTTCAAAGGAGATCATCTCACAAACTCTGCTGAGAAGCCATTGAGTATTGCTAAGTTGAAAGAGATGAGTGGAAGTGATATATTTGCAGATGGAAAGGTGGAAAATAGAGACTGTTTAGGTGGTATCCGAAAACCCCCAGGAGGTGAAAGCAGCATTTCACTAGTCTAA___TGCAAGCTATTGTGACATATACTGCAGCATTAATAACTTGTTTTATATAGTAAGCTCTCATGATGATGAGCTGAGCCAGTGGTTTTGCTTTGCACATTTTAGCAATGCCAGGTTAATAGATTGGATTAGGCTATTTACATTTTCTTTAATTCAAGGTTAGGAAGACTTTTCTATGCTAGTGATGGTAATGAATTTGAGCTGGATGTTTCATGTTAGAGCTTTACAGGAAGCATTATATCAATGGCTACAATAGAATATAGAAGAGATATCCAGAGACCACTAAAGTGCAGTGGAAAAGTTAATACAATGGATCAGACTTCTAGATAATCTTGAGAACATATGTGGCCTAACCCAGTACTATAATTTACTCAGTATAGCTTTCGTGGCAGTCATTGAACTGGATGACATAGACCATTTTCCAGTACTATAATTTACTCAGTGTAGCTTCCATG

Fln Alignment:

Contig2097___KMQEEANSPAKTRPGGHSTRDLLTWSSESSPHTPAQTHQSNGTPRLPAGGISSISLTDELTPEQADSLLKRRPCSDSKWREMTGSGIFNVGNSNDESDSALGNSTPDQPSLRPYQQGAGIISQISFAAEESVSPKKPISIAEVAKQKELSGNLKMADDTNVRRQISEAKSKELSGHDIFSPPPELPPKSLNRSLERKEEPKESGEPAQRNIRTSVKVSNPAGGHSNIIFGQETPVKTSKRVHDQKVAELTGNNIFKGDHLTNSAEKPLSIAKLKEMSGSDIFADGKVENRDCLGGIRKPPGGESSISLV
A9NLN8_______________KMQEEVNSTARARHGGRSTQDLLTWSSESSPHTPAQTHQNNGTPRLPAGGISSISLTDELTPEQTDSLLKRRPCSDSKWREMTGSGIFSVGDSNDASDSAHGNSTPDQSNLRPYQQAAGIISQISFTAEESVSPKKPISLAEVAKQKELSGNLKMTDDMHIGRHISEAKSKELSGHDIFSPPPELPPKSLNRSLERKEEPKDSGEPAQRNIRTSVKVSNPAGGHSNIIFGQETSVKTSKRVHDQKVAELTGNNIFKGDHPTNSAEKPLSIAKLREMSGSDIFADGKVENRDCLGGIRKPPGGESSISLV

SNPs (tot: 122)

Position	A %	C %	G %	T %	Probability
309	85		14		0.993533
310	14	85			0.993533
311		85	14		0.993533
312	14			85	0.993533
313			14	85	0.993533
316	14	85			0.993533
317	14			85	0.993533
318	14		85		0.993533
319			14	85	0.993533
322		85	14		0.993533
325	85		14		0.993533
326	85		14		0.993533
327	14			71	0.984337
358	88			11	0.923564
359		11	88		0.923564
361	88			11	0.923564
362		11	88		0.923564
364		11	88		0.923564
365	88	11			0.923564
366			88	11	0.923564
370			88	11	0.923564
371	88		11		0.923564
372			88	11	0.923564
375			88	11	0.923564
377	11		88		0.923564
399	11		88		0.923564
400	11		88		0.923564
411	11	88			0.923564
427	43		56		1.0
455	52		47		1.0
458	43		56		1.0
480	43		56		1.0
486	56		43		1.0
571		57		42	1.0
641	11	88			0.923564
735	90			10	0.90298
737	90	10			0.90298
738	90		10		0.90298
739		10		90	0.90298
779		87	12		0.992554
780	87			12	0.992554
781	87	12			0.992554
783	87			12	0.992554
784	87		12		0.992554
785	12		87		0.992554
791			12	87	0.992554
792			12	87	0.992554
795	87		12		0.992554
798			87	12	0.992554
1008	87		12		0.992554
1011		87	12		0.992554
1012			87	12	0.992554
1013		87	12		0.992554
1016	87	12			0.992554
1021			12	87	0.992554
1022	87	12			0.992554
1023	87			12	0.992554
1024	87		12		0.992554
1025		11	77	11	0.968132
1026		11	88		0.923564
1027	11			88	0.923564
1030		88	11		0.923564
1032	88	11			0.923564
1033	88	11			0.923564
1037			18	81	0.999994
1041		23	69	7	1.0
1043	76	7		15	0.999983
1044	7	23	69		1.0
1045		15	84		0.999986
1047	15	76		7	0.999983
1048	7	15	7		0.999985
1049	76	15	7		0.999983
1051	76			23	1.0
1053			15	84	0.999986
1054	84			15	0.999986
1055	76	7	15		0.999983
1058	7	15		7	0.999985
1060		15		84	0.999986
1090	85		14		0.999981
1093	85			14	0.999981
1094	85		14		0.999981
1096	85	14			0.999981
1097	85	14			0.999981
1098			85	14	0.999981
1099	85			14	0.999981
1101			14	85	0.999981
1102	85	14			0.999981
1103		85		14	0.999981
1104	85		14		0.999981
1106		14	85		0.999981
1114		10	89		0.999919
1117		10	89		0.999919
1119		89		10	0.999919
1121	10		89		0.999919
1122	89	10			0.999919
1123	89	10			0.999919
1127	89		10		0.999919
1130			89	10	0.999919
1133	88	11			0.999937
1237		5	94		0.998578
1244	94	5			0.998744
1293			92	8	0.999718
1383	87	12			1.0
1385		87		12	1.0
1391		12	87		1.0
1392		13		86	1.0
1395			13	86	1.0
1400		13		86	1.0
1401	13		86		1.0
1403	86			13	1.0
1428		5	94		0.997984
1429	94		5		0.997984
1431		5		94	0.997984
1435		5		94	0.997984
1437	94			5	0.997984
1442	94		5		0.998397
1445		6		93	0.999364
1446	93			6	0.999364
1734	12	87			0.992554
1735	12			87	0.992554
1736	87	12			0.992554
1754	20			20	0.99255

SSRs (tot: 1)

Start position	End position	Sequence	Length
343	358	GAA GAA GAA GAA GAA G	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain