SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1695

Length: 1167 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1695

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6681	31/33

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0354 Predicted aminomethyltransferase related to GcvT	-	-	2.0e-22	28%
FL-Next	tr=Glycine cleavage T protein-like; Oryza sativa subsp. japonica (Rice).	-	-	0.0	57%
Blast2go	protein	-	-	0.0	70%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.1.2.1-	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	small molecule metabolic process	GO:0044281	Biological Process	70%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	70%
Blast2go	aminomethyltransferase activity	GO:0004047	Molecular Function	70%

Source	InterPros	Term	Type	Identity
Sma3	Glycine cleavage T-protein, N-terminal	IPR006222	-	-
Sma3	Glycine cleavage T-protein, C-terminal barrel	IPR013977	-	-
Sma3	YgfZ/GcvT conserved site	IPR017703	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: Q5VNV1

Fln msg: Separated hits, possible frame ERROR between 344 and 355, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 251 - 401

Fln protein: S*PWLSLNVSKDMAAWQRFGRSLVDDSDVGRDVGCHCIGWGGGADFAGRAAAQSNGQGWRWFRDPRLASMGLRGLFLSDTVPPLVEADKEVDEQYYLLWRLEEGVPEGSTEIPxxxxxLAVDYKFSWLKCVISFEKECYVGQESVARTHHRGVIRKRLLPVNFIHDNGEEVHQAVAPKSEIIEVNSGKKVGTVTTALGSRGLALLRLEAAFKNTSQLNVKGLENVNVKVIRPKWWPSEWGQEEEQATAVA*

Protein Length: 252

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTTCAAAAGACATGGCAGCCTGGCAACGTTTTGGTCGTTCCTTGGTGGATGATTCTGATGTAGGTCGTGATGTTGGCTGTCACTGCATTGGTTGGGGTGGAGGTGCTGATTTTGCTGGCCGTGCTGCTGCACAAAGCAATGGTCAAGGATGGCGGTGGTTCAGGGATCCAAGATTGGCATCTATGGGATTAAGGGGCCTTTTCCTGTCAGATACTGTTCCACCGCTAGTAGAAGCTGATAAAGAAGTTGATGAGCAATATTACCTTTTATGGAGGTTAGAGGAAGGAGTACCGGAAGGTTCAACAGAAATTCCTAAxxxxxxxxxxxxCTTGGCTGTCGACTACAAATTTAGCTGGCTTAAATGCGTCATCAGCTTTGAAAAGGAATGCTATGTTGGCCAAGAATCTGTGGCTCGAACGCACCACCGCGGTGTAATTCGCAAGCGTTTATTACCAGTCAACTTCATACATGATAATGGAGAAGAGGTTCATCAAGCAGTTGCACCTAAATCTGAGATAATTGAAGTTAATTCAGGCAAAAAGGTTGGTACAGTTACAACAGCTCTTGGATCTAGGGGTCTTGCTCTCTTGAGATTAGAAGCAGCGTTTAAAAATACTTCTCAGTTAAATGTCAAAGGCTTGGAGAATGTTAATGTTAAGGTCATAAGGCCAAAATGGTGGCCTAGTGAATGGGGTCAAGAAGAGGAACAAGCAACAGCAGTTGCATAGATCGGCTGCAATGTTGATAACTATTAAAGTCTTGTTTTCATTAACTGCATATCTCTCTCATTCTTGTTAGCATGTAATTAAGGTGGCTTTTGGATTTTTCAATACTCCTTTGCACATAAAAATAATCTTCTCTTAAATCCCTCTCGATTTTTTAATTCAAATCCTCTTCATTTCTGTTTCCCTCCACCCAGTTATCTCCTTTCCTTGAAGCCATGCACTTAATTGGAGATGTATAGCGGGAACTGTAAAAGGAATGCACAAGTGTTGAATTTATGGATGAAGAGCCTGTTTATGGATTTGATATTCATCCCTGGTCCAAGTTAATTACACGATATTTCATTTGTGCTTTCATGGGGAGTAACGTTGGCAGAGGTTTATAAGATTTATGTGGTTCCTGCAAGTACCCAGTAATAT

Fln Alignment:

Contig1695___NVSKDMAAWQRFGRSLVDDSDVGRDVGCHCIXXXXXXXXXXXXXXQSNGQGWRWFRDPRLASMGLRGLFLSDTVPPLVEADKEVDEQYYLLWRLEEGVPEGSTEIPKxxxxLAVDYKFSWLKCVISFEKECYVGQESVARTHHRGVIRKRLLPVNFIHDNGEEVHQAVAPKSEIIEVNSGKKVGTVTTXXXXXXXXXXXXXXXFKNTSQLNVKGLENVNVKVIRPKWWPSEWGQEEEQATAVA
Q5VNV1_______________NVSKEFLCWQRFGRNVEHTGPSTQEPEAQSIGWGQGVDHAAESAAQGNGHGWEWFKDPRLDCLGYRGIFPANTIPPLVESDKEADERHYLLWRIENGVAEGSTEIPKxxxxIPLEYNFAGLNA-ISFEKGCYIGQELIARTHHRGVIRKRLMPLIFEDENGQELKQAVAPGSEVVDKESGKKIGTVNTALGSRGMGLLRLEEALKQNSSLAIKDNRDVRVKAIKPDWWPVEWTQMLEQQSAVA

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
373	66		16		0.988813
374	83			16	0.994512
375	66	16			0.988813
376			16	83	0.994512
378			16	83	0.994512
380		16	83		0.994512
388	83	16			0.994512
390	83	16			0.994512
392	16		83		0.994512
397	66		33		1.0
399		66	33		1.0
403		33		66	1.0
408	66		33		1.0
409	66	33			1.0
410	66			33	1.0
412			66	33	1.0
413		33	66		1.0
417		22	66		0.999999
418	22	77			0.999999
419	11			88	0.923564
457		76		23	1.0
458		23	76		1.0
462	23			76	1.0
463	76	23			1.0
464	76	23			1.0
471	76	15	7		0.999983
472			76	23	1.0
587	85			14	0.999981
589	85		14		0.999981
644	12			87	0.992554
645	87			12	0.992554
648		10		90	0.90298
649	10	90			0.90298
701	90		10		0.90298
702	90			10	0.90298
703	90	10			0.90298
705		10		90	0.90298
706			90	10	0.90298
707		10	90		0.90298
708	10			90	0.90298
711		90		10	0.90298
773		20		80	0.999996
774	10		90		0.90298
775	90	10			0.90298
777	90		10		0.90298
780		10		90	0.90298
781	90			10	0.90298
783			10	90	0.90298
784	90		10		0.90298
785	90	10			0.90298
786	90			10	0.90298
791	10			90	0.90298
1088	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain