SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1159

Length: 1486 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1159

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1978	15/17
SustainPine v2.0	sp_v2.0_unigene74239	2/17

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	uncharacterized protein loc100853077	-	-	7.3417e-40	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aliphatic acid kinase, short-chain	IPR000890	-	0.0	-
Sma3	KIP1-like	IPR011684	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVT3

Fln msg: Distance to subject end: 36 aas, your sequence is shorter than subject: 145 - 169

Fln protein: MAMAFAHIPRWLWGQRVHEAASSSSSSTSSPPVPSSSSQNSTIGMREADMLRFPSMQEARIPPRRVRRKYHSRTERRMDREYDVVLVPSDGGCISGSESDDSDWSIGWFEPHAPDFSSENESENSFAVLVPCYGLPHPSETVDSR

Protein Length: 146

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGCATGGGGTCTTGGGCCAGATTTTCTGGTTAGAAAATTGAATTTATAGGGGCTGCCTTGATTGAATTGAATTGGAGTTGTTCTTGCTGAGTTCTAAACAATTGGACTCGGCAGAACAAAATTCTCTCTGTATTTCGGCTGGGCTTTATTCTTGCCTATTTCTTGAACAGCCGGCCTCCTTGAGGAATTGGTTTTTGGTTTTGGGGATTTATTTTTTCTCAGCCCATTCTTATATAGACTCTTCCTGAGAATCTCCCCAACAGGAGTTTTGATCAGCTCTGGCTAAAAATATTGAGTGGTTTCTATTTAAAAAAAGAGTGATTTGATTGAAAGATTGAGTGGTTTTTGTTTTCGGTGATTTTTTGTGTGTTTATTGCGCGATTTGGATTGTATAAGGACAATTTTTAGTCTTTTCCCCATGCACCATTTGGATGCCTGTGAGGATCTCGTGGGGATCCGTTTTGGTTGGAGTTTAGCTCTTCTGCAGTTGAGTTTCTGTGTTTTGCAGGGCTTAAAGCCTGCTGCATAGAAACCTAAAGATATATTTGGGGAAAATTATTTTTTTGTTCTTTTAATTGGAATACATTAGGTTTGGGGCAGATTCATTGTGTTCTTATTCGGGAAGCTCTGACTGAAGCTTACGCAGACATTCTAAGCGCATTTGTCTGATCATAAAGTAATCTGCTGGGAAGTTTTGTCAGGCTTTTTAATGTGATTAGAGAAGTTCTGAGCGCGAGTCTGGATAGGCCTCTTGGCCACAATTTTGTTATTGCGTTGCGGCTTTGATTGGGGGGCACTAGCTGCAATTTCACATTAATTTTCTCAGACTATCCCAAACCCAGGACGAAAAGGTCGGTCTTTTCTCTGAAATTTATTAGTTCAAATCCTCTGTCCCATAATTGGCCCCCACCTGTCACAGCCCTCTGGTTGCTTGCTGTCAGCCTTAGAAAGCCTCACCTAATCTTGCTGTCTGCATAAAACTAAAAGCCAAACTGCATTCCACGGTCCCTAAAAATAGCCCACAGA_-_ATGGCCATGGCTTTTGCACATATACCTCGCTGGCTCTGGGGTCAAAGGGTCCACGAAGCGGCCTCTTCTTCATCTTCTTCTACATCATCCCCACCTGTGCCATCTTCTTCTTCACAGAATTCCACCATTGGTATGAGAGAAGCAGATATGCTAAGATTCCCATCAATGCAGGAAGCTCGGATTCCTCCAAGAAGAGTGAGGCGGAAATACCACAGTCGAACTGAACGGAGGATGGACAGGGAATATGATGTCGTGTTGGTGCCCTCTGATGGAGGGTGCATTTCAGGCTCAGAGTCTGATGACTCCGATTGGTCGATTGGATGGTTTGAACCACACGCCCCTGATTTTTCCAGTGAAAATGAGTCAGAGAATAGTTTTGCAGTTTTGGTACCTTGCTATGGACTGCCTCATCCTTCGGAGACCGTAGATTCCAGA

Fln Alignment:

Contig1159___MAFAHIPRWLWGQRVHEAAXXXXXXXXXXXXXXXXXQNSTIGMREADMLRFPSMQEARIPPRRVRRKYHSRTERRMDREYDVVLVPSDGG-CISGSESDDSDWSIGWFEPHAPDFXXXXXXXXXFAVLVPCYGLPHPSETVDSR
A9NVT3_______________MTFSDIARWLWRRR---ESNPRPRPSASFPSKAKPPQPSVSFLAKA---KSPEQHGAR---RRAAR-HGRRRFSEVDTEIDGFVVVADGADWTSGSDSDDSDLSIGWFERLSSGFSSDTESENSFAVLVPCYG-PSSSHAVDSR

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
110			25	75	0.996473
163			80	20	0.995493
168	20		80		0.995493
169		20	80		0.995493
173			20	80	0.995493
174	80		20		0.995493
175		20		80	0.995493
177		80	20		0.995493
179		20		80	0.995493
180	20		80		0.995493
182		80		20	0.995493
183		20		80	0.995493
363		25		75	0.996473
366	75	25			0.996473
367			75	25	0.996473
368		25		75	0.996473
370	50		50		1.0
371		50		50	1.0
372		50		50	1.0
374		50		50	1.0
375			50	50	1.0
377		50		50	1.0
379			50	50	1.0
381	50	50			1.0
382	50		50		1.0
383		50	50		1.0
384	50			50	1.0
385		50	50		1.0
631		33		66	0.997452
632	33	66			0.997452
824	87		12		0.992554
825		87		12	0.992554
826			12	87	0.992554
828		12	87		0.992554
831			87	12	0.992554
832		87	12		0.992554
833	87		12		0.992554
834	87	12			0.992554
836			12	87	0.992554
843		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain