SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene716

Length: 1591 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene716

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25115	75/85
SustainPine v2.0	sp_v2.0_unigene30835	8/85

Source	Descriptions	Term	Type	Identity
AutoFact	mitochondrial import inner membrane translocase subunit Tim17 [Arabidopsis thaliana] ref\|NP_973621.1\| mitochondrial import inner membrane translocase subunit Tim17 [Arabidopsis thaliana] sp\|Q9SP35.2\|TIM17_ARATH RecName: Full=Mitochondrial import inner mem	-	-	53%
FL-Next	sp=Mitochondrial import inner membrane translocase subunit Tim17; Arabidopsis thaliana (Mouse-ear cress).	-	-	62%
Blast2go	protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	0.0	74%
Blast2go	mitochondrial outer membrane	GO:0005741	Cellular Component	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	0.0	-
Sma3	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24	IPR003397	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SP35

Fln msg:

Fln protein: MGTPETSREPCPDRILDDVGGAFGMGAVGGSVFHLMKGIYNSPKGERILGGTQAVRLNAPRIGGSFAVWGGLFSAFDCSMVYVRQKEDPWNSIIAGAATGGFLQMRQGPRAATRSAIFGGVLLALIEGAGIMLNRVLSAQQQFPPMVEDVPNMQGPIPGFQGYGPIPANIGGPGAEPVQAPAQSSSWFGGFTGFFEGKKEESQHSGGGGKAEVLESFDQPSAPVPTFELK*

Protein Length: 232

Fln nts: ATGGAACTTTGACCCATAGGCACTACATTCCGTTAGGAGCTTCAGAAGATTCTGAAATAGCAGAATAAGTGGGGAATATATACAGAAGGGTTTGAGTTTCCTCTAGTGTTTGTAGGCGAGAAAACGTTTTAATTTTCAGACACC_-_ATGGGCACGCCGGAGACATCGCGAGAGCCATGCCCTGATCGAATTCTAGACGATGTCGGTGGCGCCTTCGGCATGGGGGCGGTGGGAGGATCAGTTTTCCATTTGATGAAAGGAATTTACAATTCCCCCAAGGGTGAACGGATTCTTGGCGGCACGCAGGCCGTGAGGCTGAATGCCCCCCGTATTGGCGGAAGCTTCGCAGTGTGGGGCGGTCTTTTCTCGGCTTTCGATTGCTCGATGGTGTACGTCAGGCAAAAAGAGGACCCATGGAATTCTATAATCGCCGGAGCCGCCACCGGAGGGTTTCTCCAAATGCGTCAGGGACCTCGGGCCGCTACCAGGTCCGCTATATTTGGTGGCGTTTTGCTTGCTTTGATAGAGGGTGCCGGGATTATGCTGAATAGGGTTTTGAGTGCGCAGCAACAGTTTCCGCCCATGGTTGAAGATGTGCCTAATATGCAGGGTCCTATTCCAGGGTTTCAAGGCTATGGACCCATCCCTGCCAATATTGGGGGTCCTGGAGCTGAGCCAGTTCAAGCTCCCGCCCAGAGTAGCTCCTGGTTTGGAGGATTCACTGGATTTTTTGAGGGCAAGAAAGAAGAATCTCAGCATAGTGGTGGTGGTGGAAAGGCTGAGGTTTTGGAGAGTTTTGATCAGCCCAGCGCTCCGGTGCCCACTTTTGAGTTAAAGTGA___TTCGGGAGATTTTGGTCTTTGTCGGCAGCAGCTACCAGGAATCAAAGAGAGTTTTCAGCTATCCATGCTATATGTGACCAGCTAATATAATTATGTAGTTCAAGGACGGGATTGATCCATCATGTCAAATTGACCTTGGTTGATGGAAATTCTCCTAATTTGAGTTCTGTGGCTGTTTACTCTTCAGAGCCGTAAGAAATTTTGTTTATTTATAGAGCTGTTTGGCTACGCATTAATTTATGTGAAGGCTGTGGAAATGAATGTGACAGGTGCGATGTGCTTTTTGCAAAGGGCTGACGAATAAAATGTAGCTGTAGGAGATTAGTGTATTTTTTATGCCAGTGGATGAGGGAAACAAGTTTTTTCTTAAATGAACATAGATTATTTGTTTAGGACTTTTAGATCGGCTTATTGATGTTACAAATGTTACTTAGAATTCCTTTCCACAGGTTATCATGTAGTCTTTAGAAATGGTGCCTGGGAACTTACTGTATATATGTTTGTTAGAAGCGTTTATACAATTAGCACTGGTTGCTTCTTTTATTATTGTTGAGGAGTTTTTAAAAACTTTCCCAGAGAATTCATTATGGTGCTCAAGTTTCAAGATTACATTTTCTCAAAAATGTGAGGCACTTATTTCAATTAAACTGCAGCTTAAAGTTCTGCTTTAAAATTAGTTTGGAAAGCGGATATTGTCAATCCTGGCAGAGAAAACaGAGCATCTCTCTCTTTAATTTCCTTACCTGGCCTTCGC

Fln Alignment:

Contig716___MGTPETSREPCPDRILDDXXXXXXXXXXXXXXXHLMKGIYNSPKGERILGGTQAVRLNAPRIGGSFAVWGGLFSAFDCSMVYVRQKEDPWNSIIAGAATGGFLQMRQGPRAATRSAIFGGVLLALIEGAGIMLNRVLSAQQQF---PPMVEDVPNMQG-----PIPGFQGYXXXXXXXXXXXXXXVQAPAQ-------XXXXXXXXXXXXXXXXXXXQHSGGGGKAEVLESFDQPSAPVPTFELK
Q9SP35______________MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKGSRFVGGTQSVSMNAPRTGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGGVLLALIEGAGIMLNKVLAQPQNMMMEDPGMQGMPGMQGMQGMPGMPGMQGMPGMQGMQMGQMQSQAQIRSESQNQNTASSSSSSSWFGGLFDKKKEEVQPGSESKTEVLESFDAP--PVPSFEFK

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
411	83	16			0.994512
426		83		16	0.994512
438		80	20		0.995493
528		14		85	0.993533
530		85		14	0.993533
531	14	71	14		0.984337
532		14	85		0.993533
533			71	28	1.0
534		14	85		0.993533
536	14	14			0.984337
537		14		85	0.993533
539	85			14	0.993533
540			14	85	0.993533
545	85			14	0.993533
546	85	14			0.993533
547	14			85	0.993533
548	85	14			0.993533
549			85	14	0.993533
550		14	85		0.993533
551	14		85		0.993533
692		90		10	0.90298
693	90			10	0.90298
695	90			10	0.90298
698	90	10			0.90298
699	10		90		0.90298
703	10	90			0.90298
758	83	16			0.999991
773	81	18			0.999994
779		18	81		0.999994
816		20		80	1.0
820	14	71		14	0.999974
821		85	14		0.999981
824	7	15		76	0.999983
827			23	76	1.0
829	76	7		15	0.999983
832		15		84	0.999986
835	76	15		7	0.999983
837	15	7		76	0.999983
910		15		84	0.999986
911	84		15		0.999986
919	84		15		0.999986
1197	60	40			1.0
1244	32	68			1.0
1351			68	31	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
758	770	GTG GTG GTG GTG G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain