SustainPineDB

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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene128

Length: 569 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene128
CGTCGTGACCTTGGCTGTCACTCAATGATCAAGAGGATGGTGGTGACAATTAATCACAGCTGCTATCCATACCAATAACAATACCATTCCAGCATTCATCCTTCCAGCCACCTCTGCTCTCTTCTTCTATATGTGAGAAGGGATTTTGAGAAGGGAGCAGCACTAGAAGCAAAGGAGATTTTCAAGCTAGGGAGCAGGAGTAGAAGCAGAGGAGATTTTGAAGTCTAGGAGCAGCAGAAGTAAAAGAGATTTTGAAGTCATGAAGCGCAGTAGGGCTGGAATCTCTGAGGATTCTCACTTTACAACAGATGAAATTGAAGTGGCAGACATTATAACCTGTTTTCACCATTACTGGAGACTCTTTCTTCAATGGGGAGCAAAGTGCAGGCGATCTGCCTTTAGGAGAGAGGAAAGCAGAGGCACCCACAACTCCAAACTGTTCCCGGTAAGTAACGAGAATGAAAGTGACGGTGAGCTTCAACATGGCGGCATGGCTATAGCACCATCACCAGAACAACGCCTGCCACTTACTTCTCATCCCTGGTTCGCAGTGAGTGACAGCCAAGGTC

Ace file of the UniGene uagpf_v2_unigene128 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20998	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	unknown [Picea sitchensis]	-	-	2.35481e-07	64%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1X0

Fln msg: Distance to subject end: 70 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 126 - 186

Fln protein: GAGVEAEEILKSRSSRSKRDFEVMKRSRAGISEDSHFTTDEIEVADIITCFHHYWRLFLQWGAKCRRSAFRREESRGTHNSKLFPVSNENESDGELQHGGMAIAPSPEQRLPLTSHPWFAVSDSQG

Protein Length: 127

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGATCAAGAGGATGGTGGTGACAATTAATCACAGCTGCTATCCATACCAATAACAATACCATTCCAGCATTCATCCTTCCAGCCACCTCTGCTCTCTTCTTCTATATGTGAGAAGGGATTTTGAGAAGGGAGCAGCACTAGAAGCAAAGGAGATTTTCAAGCTAGGGAGCAGGAGTAGAAGCAGAGGAGATTTTGAAGTCTAGGAGCAGCAGAAGTAAAAGAGATTTTGAAGTCATGAAGCGCAGTAGGGCTGGAATCTCTGAGGATTCTCACTTTACAACAGATGAAATTGAAGTGGCAGACATTATAACCTGTTTTCACCATTACTGGAGACTCTTTCTTCAATGGGGAGCAAAGTGCAGGCGATCTGCCTTTAGGAGAGAGGAAAGCAGAGGCACCCACAACTCCAAACTGTTCCCGGTAAGTAACGAGAATGAAAGTGACGGTGAGCTTCAACATGGCGGCATGGCTATAGCACCATCACCAGAACAACGCCTGCCACTTACTTCTCATCCCTGGTTCGCAGTGAGTGACAGCCAAGGTC

Fln Alignment:

Contig128___RSSRSKRDFEVMKRSRAGISEDSHFTTDEIEVADI-ITCFHHYWRLFLQWGAKCRR
A9P1X0______________KSRRSRRDFEDMKHSRIEISEDSQITAEVIEAAHILIQLYHDRKGLFLQWGAKRSR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain