SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene56209

Length: 424 nt

UniGene Fasta

>uagpf_v2_unigene56209
CGTCGTGACCTTGGCTGTCACTCAATCTTATTCAGTTTGTTGGATCTAGGGTAACGTTTTAATTTTGATTGAAGTAGCAGTTACCTCGGTTATATAATGTGTACAAAGAAATGGGAATAGTTACATCTTTCCAGAATCTGTTGGATAATGTTTTCATTCCTCTATTTGAGGTCACGGTTGATCCAAGTTCTCATCCTCAACTGCATGTCTTCTTGAAACAGGTTGTAGGTTTTGATATGGTTGATGATGAAAGCAAACCTGAAAGGCGTCCGACGAAGCACATGCCAACTCCAGAACAATGGATCAATGTCTTTAATCCTGCCTTTTCATACTATGCATACTATTGCTATGCAAATTTATACACACTCAACAAGCTTCGTGAGTCGAAGGGACTTACAACAATAAAATTCCGCCCCCACTTCGC

Ace file of the UniGene uagpf_v2_unigene56209

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9280	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	AMP deaminase, putative n=1 Tax=Ricinus communis RepID=B9T1I5_RICCO	-	-	87%
FL-Next	sp=AMP deaminase; Arabidopsis thaliana (Mouse-ear cress).	-	-	86%
Blast2go	amp deaminase	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	AMP deaminase.	EC:3.5.4.6	-	0.0	95%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	95%
Blast2go	Biosynthesis of plant hormones	01070	95%
Blast2go	Metabolic pathways	01100	95%
Blast2go	Biosynthesis of secondary metabolites	01110	95%

Source	GOs	Term	Type	Identity
Blast2go	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	95%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	95%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	95%
Blast2go	AMP deaminase activity	GO:0003876	Molecular Function	95%
Blast2go	protein histidine kinase binding	GO:0043424	Molecular Function	95%
Blast2go	cytosol	GO:0005829	Cellular Component	95%
Blast2go	microsome	GO:0005792	Cellular Component	95%
Blast2go	nucleus	GO:0005634	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	AMP deaminase	IPR006329	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O80452

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 178 aas, your sequence is shorter than subject: 140 - 839

Fln protein: S*PWLSLNLIQFVGSRVTF*F*LK*QLPRLYNVYKEMGIVTSFQNLLDNVFIPLFEVTVDPSSHPQLHVFLKQVVGFDMVDDESKPERRPTKHMPTPEQWINVFNPAFSYYAYYCYANLYTLNKLRESKGLTTIKFRPHF

Protein Length: 141

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTTATTCAGTTTGTTGGATCTAGGGTAACGTTTTAATTTTGATTGAAGTAGCAGTTACCTCGGTTATATAATGTGTACAAAGAAATGGGAATAGTTACATCTTTCCAGAATCTGTTGGATAATGTTTTCATTCCTCTATTTGAGGTCACGGTTGATCCAAGTTCTCATCCTCAACTGCATGTCTTCTTGAAACAGGTTGTAGGTTTTGATATGGTTGATGATGAAAGCAAACCTGAAAGGCGTCCGACGAAGCACATGCCAACTCCAGAACAATGGATCAATGTCTTTAATCCTGCCTTTTCATACTATGCATACTATTGCTATGCAAATTTATACACACTCAACAAGCTTCGTGAGTCGAAGGGACTTACAACAATAAAATTCCGCCCCCACTTCGC

Fln Alignment:

uagpf_mira_c94457___QLPRLYNVYKEMGIVTSFQNLLDNVFIPLFEVTVDPSSHPQLHVFLKQVVGFDMVDDESKPERRPTKHMPTPEQWINVFNPAFSXXXXXXXXXXXXXXKLRESKGLTTIKFRPH
O80452________________QLPRLYNIYKDMGIVTSFQNILDNIFIPLFEATVDPDSHPQLHVFLKQVVGFDLVDDESKPERRPTKHMPTPAQWTNAFNPAFSYYVYYCYANLYVLNKLRESKGMTTITLRPH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain