SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene54051

Length: 403 nt

UniGene Fasta

>uagpf_v2_unigene54051
CGTCGTGACCTTGGCTGTCACTCATTTTTTGAGACTCGAATCATTTTTTTATGACGCGGGTTTAACTATAGCATCGGTTGATTCCTGCTTGGAGAAGCGGAAGCCTTGCAATACACATTTTTTTGAAAACAAGCGGATCCCATTCTCGCCGTGAAGCTCGTCAGTTAGGACTTTACGGAGATTAAATACTTTTGTTGTGCAGGAGTAAATCATTTCTTTGCTGTGCATCATGGCTACCAGAACTCAGTTTGAAAATTCCAGTGAGGTTGGCGTCTTTTCAAAACTTACTAATGGATATTGCCTGGTGGCCATTGGAGGATCAGAAAACTTTTACAGTACATTTGAGGCAGAACTGGCAGATGTTATTCCTGTTGTGAAGACATCTATAGGAGGCACCAGGATT

Ace file of the UniGene uagpf_v2_unigene54051

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene31091	3/5
SustainPine v2.0	sp_v2.0_unigene79978	2/5

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic translation initiation factor 6-2 n=8 Tax=Magnoliophyta RepID=IF62_ARATH	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	eukaryotic translation initiation factor 6	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to abscisic acid stimulus	GO:0071215	Biological Process	92%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	92%
Blast2go	cytosol	GO:0005829	Cellular Component	92%
Blast2go	nucleolus	GO:0005730	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Translation initiation factor IF6	IPR002769	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NK83

Fln msg: Distance to subject end: 187 aas, your sequence is shorter than subject: 58 - 245

Fln protein: MATRTQFENSSEVGVFSKLTNGYCLVAIGGSENFYSTFEAELADVIPVVKTSIGGTRI

Protein Length: 59

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTGAGACTCGAATCATTTTTTTATGACGCGGGTTTAACTATAGCATCGGTTGATTCCTGCTTGGAGAAGCGGAAGCCTTGCAATACACATTTTTTTGAAAACAAGCGGATCCCATTCTCGCCGTGAAGCTCGTCAGTTAGGACTTTACGGAGATTAAATACTTTTGTTGTGCAGGAGTAAATCATTTCTTTGCTGTGCATC_-_ATGGCTACCAGAACTCAGTTTGAAAATTCCAGTGAGGTTGGCGTCTTTTCAAAACTTACTAATGGATATTGCCTGGTGGCCATTGGAGGATCAGAAAACTTTTACAGTACATTTGAGGCAGAACTGGCAGATGTTATTCCTGTTGTGAAGACATCTATAGGAGGCACCAGGATT

Fln Alignment:

uagpf_mira_rep_c82789___MATRTQFENSSEVGVFSKLTNGYCLVAIGGSENFYSTFEAELADVIPVVKTSIGGTRI
A9NK83________________MATRTQFENSSEVGVFSKLTNAYCLVAIGGSENFYSTFEAELADVIPVVKTSIAGTRI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain