SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53556

Length: 299 nt

UniGene Fasta

>uagpf_v2_unigene53556
CGTCGTGACCTTGGCTGTCACTCAGTTCAGATTGCAATGTCAGGATGCTATGCAGGACCTATGTTTAATACACTTGTTGGCCTTGGTGTCCCTTTGTTGCTGGGATCCTGGTCCAAGCGACCTGCTGCCTATATTGTTCCAAAAGATACCAGTTTGTTTTACACCCTGGGATTTCTTGTAACAGGGCTTCTGTGGGCACTGGTGGTTTTGCCCATGAATGATATGCGCCCAGGCAAGTTGTTGGGAATTGGCCTTTTAACTTTATATTCATCATTCCTTCTTCTGAGATTGAGCAGTGC

Ace file of the UniGene uagpf_v2_unigene53556

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4254	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Cation/calcium exchanger 4 n=2 Tax=Arabidopsis RepID=CCX4_ARATH	-	-	55%
FL-Next	sp=Cation/calcium exchanger 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	67%
Blast2go	cation calcium exchanger 4	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	cellular cation homeostasis	GO:0030003	Biological Process	73%
Blast2go	sodium ion export	GO:0071436	Biological Process	73%
Blast2go	response to cation stress	GO:0043157	Biological Process	73%
Blast2go	manganese ion transmembrane transport	GO:0071421	Biological Process	73%
Blast2go	sodium ion transmembrane transporter activity	GO:0015081	Molecular Function	73%
Blast2go	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	73%
Blast2go	manganese ion transmembrane transporter activity	GO:0005384	Molecular Function	73%
Blast2go	cation:cation antiporter activity	GO:0015491	Molecular Function	73%
Blast2go	cytoplasmic vesicle membrane	GO:0030659	Cellular Component	73%
Blast2go	mitochondrion	GO:0005739	Cellular Component	73%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	73%
Blast2go	potassium ion transmembrane transport	GO:0071805	Biological Process	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	0.0	-
Sma3	Sugar transporter, conserved site	IPR005829	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9SYG9

Fln msg: STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 99 - 644

Fln protein: RRDLGCHSVQIAMSGCYAGPMFNTLVGLGVPLLLGSWSKRPAAYIVPKDTSLFYTLGFLVTGLLWALVVLPMNDMRPGKLLGIGLLTLYSSFLLLRLSS

Protein Length: 100

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTCAGATTGCAATGTCAGGATGCTATGCAGGACCTATGTTTAATACACTTGTTGGCCTTGGTGTCCCTTTGTTGCTGGGATCCTGGTCCAAGCGACCTGCTGCCTATATTGTTCCAAAAGATACCAGTTTGTTTTACACCCTGGGATTTCTTGTAACAGGGCTTCTGTGGGCACTGGTGGTTTTGCCCATGAATGATATGCGCCCAGGCAAGTTGTTGGGAATTGGCCTTTTAACTTTATATTCATCATTCCTTCTTCTGAGATTGAGCAGTGC

Fln Alignment:

uagpf_mira_rep_c79010___GCHSVQIAMSGCYAGPMFNTXXXXXXXXXXXSWSKRPAAYIVPKDTSLFYTLGFLVTGLLWALVVLPMNDMRPGKLLGIG
Q9SYG9________________GGDGVQIALSGCYAGPMFNTLVGLGMSMFLGAWSKSPETYMIPEDNSLFYTLGFLIFGLIWSLVMLPRNEMRPNKVMGIG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain