SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53553

Length: 285 nt

UniGene Fasta

>uagpf_v2_unigene53553
CGTCGTGACCTTGGCTGTCACTCATACTTGAAGGTTTTGTGGCATTGTTTATTATTTTACAGGCCAGAAAGATGCCTCAAATACAGTATTCTGAGAAATACTACGACGATACCTATGAGTATAGGCATGTTGTGCTTCCGCCTGACGTTGCCCGACTTCTTCCCAAGAATCGCCTGTTGAACGAGGTAAGCCACGGGTTTTCTTATTGGAAGTTGCGAGGTCGATCCTAATGTCCTTTTTCGTTTCATGATCGGGTTCTGAGACGCGGATTTAAGGAATGTCAAG

Ace file of the UniGene uagpf_v2_unigene53553

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene79132	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cyclin-dependent kinases regulatory subunit [Ostreococcus tauri]	-	-	1.0e-13	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	cyclin-dependent kinases regulatory subunit	-	-	7.13514e-19	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitotic cell cycle	GO:0000278	Biological Process	7.13514e-19	91%
Blast2go	DNA endoreduplication	GO:0042023	Biological Process	7.13514e-19	91%
Blast2go	regulation of cell cycle	GO:0051726	Biological Process	7.13514e-19	91%
Blast2go	protein binding	GO:0005515	Molecular Function	7.13514e-19	91%
Blast2go	cytoplasm	GO:0005737	Cellular Component	7.13514e-19	91%

Source	InterPros	Term	Type	Identity
Sma3	Cyclin-dependent kinase, regulatory subunit	IPR000789	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLW6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 22 aas, your sequence is shorter than subject: 53 - 93

Fln protein: MPQIQYSEKYYDDTYEYRHVVLPPDVARLLPKNRLLNEVSHGFSYWKLRGRS*

Protein Length: 54

Fln nts: CGTCGTGACCTTGGCTGTCACTCATACTTGAAGGTTTTGTGGCATTGTTTATTATTTTACAGGCCAGAAAG_-_ATGCCTCAAATACAGTATTCTGAGAAATACTACGACGATACCTATGAGTATAGGCATGTTGTGCTTCCGCCTGACGTTGCCCGACTTCTTCCCAAGAATCGCCTGTTGAACGAGGTAAGCCACGGGTTTTCTTATTGGAAGTTGCGAGGTCGATCCTAATGTCCTTTTTCGTTTCATGATCGGGTTCTGAGACGCGGATTTAAGGAATGTCAAG

Fln Alignment:

uagpf_mira_rep_c78995___MPQIQYSEKYYDDTYEYRHVVLPPDVARLLPKNRLLNE
A9NLW6________________MPQIQYSEKYYDDTYEYRHVVLPPDVARLLPKNRLLTE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain