SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53469

Length: 399 nt

UniGene Fasta

>uagpf_v2_unigene53469
CGTCGTGACCTTGGCTGTCACTCAATGTAGGGTTTTGGAAGAATATGGCTAGGGTTTCGGATGAGTGAAGGCTGATTCTAGACAAATACGGTTAGAACCACGATACCTTATTTTTCTGGGAGACGGAGCGCAGGCAGAGCGACGCGGCGAGCGCTTCTAGGCATCAGCAGGAGGTGAAAAACGGGGAAAAATTCCAGCAGAGGACTTTTGTTCAGGGGGGCTTCGAATACATTTTCTGAAGATGTCAGTCAGTGAAGTTGCCTGTACCTATGCAGCATTGATTCTCTGGGATGATGGCATCCCAGTTACTGGTGAGAAGATTAGCACGTTAGTGAAGGCTGCAAAGGTGCCGATAGAAGCCTATTGGCCTGGTCTCTTTGCCAAGCTTCTGGAGAAAAG

Ace file of the UniGene uagpf_v2_unigene53469

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21066	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chain t, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome pdb\|3IZ5\|UU Chain u, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Tr	-	-	1.0e-17	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	60s acidic ribosomal protein p1	-	-	1.95579e-29	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein 60S	IPR001813	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NR17

Fln msg: Distance to subject end: 59 aas, your sequence is shorter than subject: 52 - 112

Fln protein: MSVSEVACTYAALILWDDGIPVTGEKISTLVKAAKVPIEAYWPGLFAKLLEK

Protein Length: 53

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTAGGGTTTTGGAAGAATATGGCTAGGGTTTCGGATGAGTGAAGGCTGATTCTAGACAAATACGGTTAGAACCACGATACCTTATTTTTCTGGGAGACGGAGCGCAGGCAGAGCGACGCGGCGAGCGCTTCTAGGCATCAGCAGGAGGTGAAAAACGGGGAAAAATTCCAGCAGAGGACTTTTGTTCAGGGGGGCTTCGAATACATTTTCTGAAG_-_ATGTCAGTCAGTGAAGTTGCCTGTACCTATGCAGCATTGATTCTCTGGGATGATGGCATCCCAGTTACTGGTGAGAAGATTAGCACGTTAGTGAAGGCTGCAAAGGTGCCGATAGAAGCCTATTGGCCTGGTCTCTTTGCCAAGCTTCTGGAGAAAAG

Fln Alignment:

uagpf_mira_rep_c78378___MSVSEVACTYAALILWDDGIPVTGEKISTLVKAAKVPIEAYWPGLFAKLLEK
A9NR17________________MSVSEVACTYAALILWDDGIPVTGEKINTLVKAANVKIESYWPGLFAKLLEK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
26		33	33	33	0.997751
29	33		66		0.997476
31	66	33			0.997464
35	33		66		0.997467
36		33	33	33	0.997752
38		33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain