SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53379

Length: 474 nt

UniGene Fasta

>uagpf_v2_unigene53379
CGTCGTGACCTTGGCTGTCACTCAATTTTTCATTTCATTTCATTTGAGAGAGGCGTAGGGTTAGAAGTGATCGAGGTTTTCATTGCGGAGTAGCCACAGAAACCTGCTGGGCAAGCATTTGCAGGGCAAGTTTCTTCTGTAACAGCGGTGTTTCGAGATCGAATCTGAGTGCTAAAGCTGAGATTAGGGTTTCTGAAGAAATTTGAGCCATGTCGGACGCTCCGGAATATCGCTGCTTCGTTGGAGGCCTCTCGTGGAGCACATCTGACAGGACTTTGGAAGATGCTTTTCACAAGTTTGGTCATCTCATTGAGGCAAAGGTTGTCGTTGACAGGGATACTGGTCTTCGCAGTTTGTGTTTGTCCATTGAGACAAGAAGTCCATGGAAGATGCCATAGATTCCATGCATGGGATGAGTCTTGATGGCCGTTCTATAACCGTTGACAGAGCTCGGCCAAAGAGTGATGGGGAGAT

Ace file of the UniGene uagpf_v2_unigene53379

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2945	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA recognition motif and CCHC-type zinc finger domain-containing protein [Arabidopsis thaliana] gb\|AAL11606.1\|AF424613_1 AT3g26420/F20C19_14 [Arabidopsis thaliana] dbj\|BAB02203.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAK96804.1\| Unknown prot	-	-	7.0e-35	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	rna recognition motif family expressed	-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	cold acclimation	GO:0009631	Biological Process	72%
Blast2go	RNA binding	GO:0003723	Molecular Function	72%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	72%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	72%
Blast2go	cytoplasm	GO:0005737	Cellular Component	72%
Blast2go	nucleus	GO:0005634	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015465	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNN7

Fln msg: Separated hits, possible frame ERROR between 344 and 371, Distance to subject end: 124 aas, your sequence is shorter than subject: 88 - 215

Fln protein: MSDAPEYRCFVGGLSWSTSDRTLEDAFHKFGHLIEAKVVVDRDTxxxxxxxxxxDKKSMEDAIDSMHGMSLDGRSITVDRARPKSDGE

Protein Length: 89

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTCATTTCATTTCATTTGAGAGAGGCGTAGGGTTAGAAGTGATCGAGGTTTTCATTGCGGAGTAGCCACAGAAACCTGCTGGGCAAGCATTTGCAGGGCAAGTTTCTTCTGTAACAGCGGTGTTTCGAGATCGAATCTGAGTGCTAAAGCTGAGATTAGGGTTTCTGAAGAAATTTGAGCC_-_ATGTCGGACGCTCCGGAATATCGCTGCTTCGTTGGAGGCCTCTCGTGGAGCACATCTGACAGGACTTTGGAAGATGCTTTTCACAAGTTTGGTCATCTCATTGAGGCAAAGGTTGTCGTTGACAGGGATACTGGxxxxxxxxxxxxxxxxxxxxxxxxxxxAGACAAGAAGTCCATGGAAGATGCCATAGATTCCATGCATGGGATGAGTCTTGATGGCCGTTCTATAACCGTTGACAGAGCTCGGCCAAAGAGTGATGGGGAGAT

Fln Alignment:

uagpf_mira_rep_c77835___MSDAPEYRCFVGGLSWSTSDRTLEDAFHKFGHLIEAKVVVDRDTGxxxxxxxxxDKKSMEDAIDSMHGMSLDGRSITVDRARPKSDGE
A9NNN7________________MSDAPEYRCFVGGLSWSTSDRTLEDAFHKFGHLIEAKVVVDRDTGxxxxxxxxxDKKSMEDAIDSMHGMSLDGRSITVDRARPKSDGE

SSRs (tot: 1)

Start position	End position	Sequence	Length
28	45	TTTCA TTTCA TTTCA TTT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain