SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12103

Length: 1200 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12103

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22873	84/86

Source	Descriptions	Term	Type	Identity
AutoFact	tobamovirus multiplication 2A protein [Arabidopsis thaliana] ref\|NP_973952.1\| tobamovirus multiplication 2A protein [Arabidopsis thaliana] ref\|NP_001031127.1\| tobamovirus multiplication 2A protein [Arabidopsis thaliana] gb\|AAG50101.1\|AF334723_1 unknown pr	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	tobamovirus multiplication 2a protein	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	viral replication complex formation and maintenance	GO:0046786	Biological Process	73%
Blast2go	protein binding	GO:0005515	Molecular Function	73%
Blast2go	vacuole	GO:0005773	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Tetraspanin	IPR018499	-	0.0	-
Sma3	Tetraspanin, subgroup	IPR000301	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 101)

Position	A %	C %	G %	T %	Probability
37		85		14	0.993533
38	20	70	10		0.999998
39	70		30		1.0
42		10	30	60	1.0
44			30	70	1.0
45	90		10		0.90298
46		90	10		0.90298
51	60		30	10	1.0
54	70			30	1.0
56	30			10	1.0
58	10			90	0.90298
59	10	20	70		0.999998
60	20		80		0.999996
61	90		10		0.90298
64	30		10		1.0
94		70	30		1.0
102		16		83	0.999991
103			16	83	0.999991
106			16	83	0.999991
108		83	16		0.999991
109	16			83	0.999991
111		16		83	0.999991
112			83	16	0.999991
114			16	83	0.999991
115	83		16		0.999991
116	83	16			0.999991
117		17		82	1.0
119	7			92	0.999532
121	75	7	17		1.0
122		7		92	0.999532
123			14	71	1.0
125	88	5	5		0.985613
126	5	94			0.998744
127		14		82	1.0
129	5			94	0.998744
130		5	17	77	1.0
131			17	82	1.0
133	79		11		1.0
134	79			11	1.0
135		90		9	1.0
140	1	88		9	1.0
141		90		9	1.0
142	1			88	1.0
143	7		11	81	1.0
146			92	7	1.0
147	92		7		1.0
148			90	9	1.0
150	6		93		1.0
151		6		93	1.0
153		6	93		1.0
154	6	91	1		1.0
162	96			3	0.987242
325		3		96	0.988939
327			96	3	0.988939
328	96	3			0.988939
335			96	3	0.991164
338	96	3			0.993591
339	96			3	0.993591
341		3	96		0.993591
343	96	3			0.993591
344	3		96		0.993591
394		10	89		1.0
396	86			10	1.0
397	89		10		1.0
399	89	10			1.0
400		10		89	1.0
410		94		5	0.998397
412	2	5	91		0.993509
414		5		94	0.998397
415	5	2	91		0.993509
438	84	3		7	0.99801
439	16			84	1.0
443	91			8	0.999766
446	8			79	1.0
621		90	10		0.90298
623		10	90		0.90298
627	90		10		0.90298
629		10	90		0.90298
633		90	10		0.90298
635		90		10	0.90298
636	90		10		0.90298
637	90			10	0.90298
638	90	10			0.90298
639	10		90		0.90298
642	10			90	0.90298
779	87	12			0.992554
782		12	87		0.992554
787			12	87	0.992554
791			87	12	0.992554
797		12		87	0.992554
800	87	12			0.992554
801	12			87	0.992554
948	40		60		1.0
954	40		60		1.0
979	40	60			1.0
1033			75	25	0.996473
1071	75		25		0.996473
1086	25		75		0.996473
1101	25		75		0.996473
1119		25		75	0.996473
1131	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain