SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11934

Length: 1641 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene11934

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17629	84/91
SustainPine v2.0	sp_v2.0_unigene80555	4/91

Source	Descriptions	Term	Type	Identity
AutoFact	Multicopper oxidase, putative n=1 Tax=Ricinus communis RepID=B9RXJ3_RICCO	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	l-ascorbate oxidase homolog	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	80%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Lipocalin	IPR002345	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWT1

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 514 - 539

Fln protein: PWLSLKYFTWTVTYGTIYPMGVPQQGILINGQFPGPQLDVVTNDNVIINVFNYLNEPFLLTWNGIQQRRNSWQDGVLGTNCPILPRRNFTYKFQVKDQIGTYFYFPSTALHRAAGGFGGLAIASRSVIPVPYPTPNGEYTALIGDWYKLNHAVLRRWLDNGKALGMPNGVHINGRGNGLSTFKVDPGKTYKLRISNVGLSTTLNFRIQGHKMKLVEVEGSHTIQNVYDSLDIHVGQSCSVLITANQVPKDYYIVASTRFTTPVLNGVALLRYSNSRQPASGPLPPGPTIQIDWSINQAKSIRWNLTANAARPNPQGSYHYGLIKPSRTIILANSAPIINGKQRYAVNGVSFLPLDTLVTLADYLKIQGVFNLGTLPDYPRGGGAYLQAAVMSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYNLFDAVSRSTTQVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKVAGAEMLDEYSVPRNAFVRESQRPAT

Protein Length: 515

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAAAATGGGGTTCTCGCAGAGGATACTGGCAGTGATCTGTCTGGTGTGGTTTGCCTCTGCTGGGCGTCGTGACCTTGGCTGTCACTCAAGTACTTTACATGGACTGTCACATATGGGACTATTTATCCCATGGGTGTCCCTCAGCAGGGGATCTTAATCAACGGCCAGTTTCCTGGACCCCAACTCGATGTTGTGACGAACGATAATGTTATTATCAATGTTTTTAACTATCTGAACGAGCCTTTTTTGCTTACATGGAATGGAATCCAGCAACGAAGAAATTCGTGGCAAGATGGAGTGCTGGGAACCAATTGTCCAATACTTCCCCGCAGAAACTTCACTTACAAATTTCAAGTCAAGGATCAGATCGGCACCTACTTTTATTTTCCTTCCACGGCTCTGCACAGGGCTGCTGGGGGATTTGGAGGTTTGGCCATTGCTAGCAGGTCTGTTATCCCTGTTCCGTACCCCACTCCTAATGGGGAATACACCGCTTTGATCGGAGACTGGTACAAACTTAATCACGCGGTTCTTCGAAGATGGCTTGATAATGGAAAAGCTCTCGGCATGCCCAACGGCGTTCACATAAACGGGCGGGGCAACGGGCTTTCTACATTCAAGGTCGACCCAGGGAAAACTTACAAGCTCCGGATTTCGAATGTGGGACTGTCAACGACGTTAAACTTCAGGATCCAGGGCCACAAGATGAAGCTGGTGGAAGTTGAAGGATCCCACACAATTCAGAACGTCTATGACTCCCTGGATATCCATGTGGGTCAGTCTTGTTCGGTGCTCATAACTGCAAACCAGGTTCCCAAAGACTACTACATAGTTGCATCCACGCGCTTCACAACTCCTGTGTTAAATGGAGTGGCTCTTCTGCGCTACAGCAACTCCAGGCAACCGGCCTCTGGCCCCCTACCTCCCGGTCCTACTATTCAGATCGACTGGTCTATCAACCAGGCGAAGTCCATCAGATGGAATTTGACGGCCAACGCAGCTCGCCCCAATCCACAGGGTTCCTATCATTACGGCCTCATAAAGCCTTCGAGAACTATCATCCTGGCCAATTCGGCTCCCATCATTAACGGAAAGCAGCGATACGCAGTAAATGGCGTCTCCTTCTTGCCTCTCGATACGCTCGTGACCTTGGCTGACTATTTAAAAATCCAGGGAGTATTCAATTTGGGTACCCTCCCTGATTACCCCAGAGGAGGAGGTGCGTACCTCCAGGCTGCAGTCATGTCGGGCCAGTTCAGGTCATTTATTGAGATCGTGTTCCAGAACAACGAAAACACAATTCAGTCCTGGCATGTAGATGGCTATTCCTTCTTCGTGGCGGGAATGGAGGGTGGACAATGGAGTCCCGCTAGTAGGAAGAGCTACAATCTGTTCGATGCAGTTTCTCGCTCCACTACACAGGTATATCCCCAATCTTGGACTGCAATTTTAGTGATGCTGGACAATGCGGGGATGTGGAACATAAGGTCTGGGATGTGGGCAAGGCAGTACTTGGGGCAGCAGTTCTACATGAAAGTTGCAGGAGCTGAGATGCTCGACGAATACTCTGTTCCTCGAAACGCCTTTGTGCGGGAGAGCCAGAGGCCAGCCACCCC

Fln Alignment:

Contig11934___VVCLCWAS*PWL----SLKYFTWTVTYGTIYPMGVPQQGILINGQFPGPQLXXXXXXXXXXXXXXYLNEPFLLTWNGIQQRRNSWQDGVLGTNCPILPRRNFTYKFQVKDQIGTYFYFPSTALHRAAGGFGGLAIASRSVIPVPYPTPNGEYTALIGDWYKLNHAVLRRWLDNGKALGMPNGVHINGRGNGLSTFKVDPGKTYKLRISNVGLSTTLNFRIQGHKMKLVEVEGSHTIQNVYDSLDIHVGQSCSVLITANQVPKDYYIVASTRFTTPVLNGVALLRYSNSRQPASGPLPPGPTIQIDWSINQAKSIRWNLTANAARPNPQGSYHYGLIKPSRTIILANSAPIINGKQRYAVNGVSFLPLDTLVTLADYLKIQGVFNLGTLPDYPRGGGAYLQAAVMSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYNLFDAVSRSTTQVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKVAGAEMLDEYSVPRNAFV
A9NWT1________________VICVVWITAAGVRTEDAYKYFTWTVTYGTIYPMGVPQQGILINGQFPGPQLNVVTNDNVIINVFNYLNEPFLLSWNGIQQRRNSWQDGVLGTSCPIPPRRNFTYKFQAKDQIGTYFYFPSTLLHKAAGGFGGLAIASRSVISIPYPTPAGEYTALIGDWYKTNHAVLRRWLDSGRALGMPNGVHINGRGKGLSTFKVDPGRTYRLRISNVGLSTSLNFRIQGHKMKLVEVEGSHTVQNVYDSLDLHVGQSCSVLITADQAPKDYYIVASTRFTNPVLYGVALLRYSNSRQPASGPLPPGPTTQIDWSLSQARSIRWNLTANAARPNPQGSYHYGLIKPARTITLANSAPIINGKQRYAVNGVSFMPPDTPLKLADYFKIQGVFNLGTISDYPRGGGGYLQTAVMSGQFRSFIEIVFQNDENTIQSWHIDGYSFFVAGMDGGQWSPASRKGYNLFDAVSRSTTQVYPNSWTAVLLMLDNAGMWNVRSEIWARQYLGQQFYMKVAGFAGQDEYIVPRNALM

SNPs (tot: 104)

Position	A %	C %	G %	T %	Probability
90		60	40		1.0
91			60	40	1.0
96	40		60		1.0
100			40	60	1.0
101	40			60	1.0
104	40	60			1.0
105		40		60	1.0
109	60			40	1.0
110		60		40	1.0
111	40			60	1.0
114	83	16			0.994512
119			16	83	0.994512
121			16	83	0.994512
124	83	16			0.994512
126			83	16	0.994512
128	83		16		0.994512
146	61	38			1.0
147			38	61	1.0
149		38		61	1.0
150	61		38		1.0
153	38	61			1.0
156	61			38	1.0
160		38	61		1.0
165	38	61			1.0
266	41		58		1.0
378	10	90			0.90298
401		87		12	0.992554
402		12		87	0.992554
403	87		12		0.992554
423			83	16	0.994512
426		83	16		0.994512
429	16	83			0.994512
430	83	16			0.994512
432	83			16	0.994512
433			80	20	0.995493
441	6	18	6		1.0
443		25	68	6	1.0
444	18	6	75		1.0
487		25		75	1.0
537		5	94		0.997984
542	92			7	1.0
543	92	2	5		0.992495
544	65		34		1.0
549	94	5			0.9982
607		64		35	1.0
662	89		3		0.998606
944		88	11		0.923564
945		88		11	0.923564
947		88	11		0.923564
953		88		11	0.923564
954		88	11		0.923564
955		50		50	1.0
956			87	12	0.992554
1013		50		50	1.0
1036		80		20	0.995493
1037	80			20	0.995493
1038	80	20			0.995493
1039			20	80	0.995493
1088	83		16		0.994512
1091		83	16		0.994512
1094	16		83		0.994512
1097	83			16	0.994512
1098	83			16	0.994512
1099			16	83	0.994512
1100			16	83	0.994512
1103			83	16	0.994512
1105	16			83	0.994512
1109	20	80			0.995493
1171		33		66	1.0
1173		33	66		1.0
1177	33	66			1.0
1178	33	66			1.0
1179		33		66	1.0
1181	33		66		1.0
1184			33	66	1.0
1188	66			33	0.997452
1193		33		66	1.0
1195		33		66	0.997452
1198	33	66			1.0
1273	80	20			0.995493
1277	80		20		0.995493
1281		20		80	0.995493
1283			80	20	0.995493
1284			80	20	0.995493
1286		80	20		0.995493
1288	80			20	0.995493
1295		20	80		0.995493
1355		14		85	0.993533
1357			85	14	0.993533
1359			14	85	0.993533
1360	85			14	0.993533
1361			14	85	0.993533
1362	14			85	0.993533
1367		85	14		0.993533
1368			14	85	0.993533
1369		14		85	0.993533
1370		85		14	0.993533
1373		14	85		0.993533
1374	14		85		0.993533
1376			85	14	0.993533
1377		14	85		0.993533
1378	14		85		0.993533
1469	80		20		0.995493
1495		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain