SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11894

Length: 2071 nt

UniGene Fasta

>uagpf_v2_unigene11894
CGTCGTGACCTTGGTTGTGACCTTGGGTGTAAGTGGTTTCATTAATAAACACTGATTGTCACTAATCTTAGTAGAAGCGATCTCACTGTCTCGCGAGTTTCAGCTGAATTTGAGTTCGTCCGGGAAGAAGAGCAGAGCAGAACAGATAGATGACTACCATGAAATCTTTCATCCCCATAAGTCCGGACTCCCATTTCTCTCTCCAGAATCTGCCCTATGGAGTCTTCAAGCCCAACCAAGCGGCCGAAGCGCGCCCTGGTGTGGCCATTGGCGAGTATGTGTTGGACCTCAGTGTTCTGTCTCGAGCTGGCCTTTTCAATGGACCTCTGCTCAGTAGATCCGACTGCTTCCTTCAGCCATCTCTGAATGCTTTCATGGCTATGGGAAAGCCTGCATGGAAGGAGGCACGCGGAACAATTCAGAAACTTTTGTCAGTTGATGAACCAGTCTTGCGAGATAATGTCGAATTGCAGAAAAGTGCATTGTTACCAATGAGTCAGGTTCAGTTGATGCTGCCTGCTGTAATAGGGGACTATACAGACTTCTTTACCTCCAAGTATCACACAATGAACTGTGGAATCATATTTCGTGGTCCTGAAAATCCTCTTCCTCCAAACTGGCTTCATCTTCCAGTTGCATATCATGGGAGAGCATCCTCTGTTGTTATCTCTGGAACAGATCTTCACAGACCTAGAGGTCAAAAACGTCCAATGGGCACACCTACACCAGGATTTGGACCAAGTGTGAAACTTGATTTTGAGCTAGAAATGGCTATGCTGGTTGGACCTGGAAATGAGTTGGGAACGTCTGTGAGTGTGGATGATGCAGCTGATCATATTTTTGGGCTGGTTCTAATGAATGATTGGAGTGCAAGGGATATACAGGCGTGGGAATATCAACCACTTGGGCCATTTTTGGGAAAGAGCTTTGGAACAAGCATCTCACCCTGGATTGTCACTCTAGAGGCCTTAGAACCTTTCACCTGTGAAGCACCTGTACAGGATCCACCTCCCCTGCCCTATCTCACTGGGAAAAGTAGCAGGACCTATGATATCCCTTTAGAGGTTGCCTTAAAACCAGCCGGGGAAGAGAAAGCTTCTGTTATTTGTAAGAGCAACTTTAAACACCTATATTGGACAATTGAACAACAACTTGCACACCATACCATCAATGGTTGTAATTTGAGGTCTGGAGATTTGCTAGGATCTGGAACCATAAGTGGGCCTGAGCCTGAAAGTTTTGCTTCCCTATTAGAGCTATCATGGGATGGGAAGAAGCCACTGAAACTTGGAAATAATATCTCTCGAACATTTGTGGAAGATGGTGATGAGGTCATTTTAACAGCATGCTGTCAGGGAGATGGATATAAGGTGGGCTTTGGTACATGCTCTGGAAAGATACTACCTGCAATTTCCTGACCAGTAAAGTTATAATCTTTGTTTCCTATTATATGGCACATCTTCAAGACTCTGTTGGGTGAATTCTTTTAGGGAGGCTCAATTGTGATATAGTATGTGCTTCAGCAGGACATTATTTATTGGTAATTCTATTCTAGGTAATGAACTAAAAGCAGCAGAATTGTCAAAGGAATTGGCTAATTTTGTAATTGGTCATAAGTTACATACCAGATTGTTAGTTGCCCAATATGGTGATGGCTACCGGGCAGTAGTATCATGCCTTACTGATTCTGAGTCTTTGTGGTCCCCTGTTTTAAACCTTGTTGCCTATCACGTTGGTAATGCTCACTGTGTTGGCTTTTATCTTTCATTCATCAGTTCTTTGGCTGAGACTTTTTATTCTTCACTTACCTTGCTTGTTGCTATGGTGGATTTTTTGTATTTACAACTACCAAATGCGTGAGCAAATAATATAGGTGTGTAGGGTTAAGTCTGCGAGTTCGTAGGTTTTTCTACAGTGCTTGTTGGTAGGAGCTGAGAATTTAAGACGACTATATCTTGAAAAAGTTGTTGAAAAATGTTAGTTTCTGAAGCAATTCTATGACAACTTGTCTAGAAGTTGAATGTTGTTTACATTGGGTTAATTTCAGGCTCTCATAATATACACAATTTTT

Ace file of the UniGene uagpf_v2_unigene11894

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15864	47/92
SustainPine v2.0	sp_v2.0_unigene26774	2/92
SustainPine v2.0	sp_v2.0_unigene61330	36/92

Source	Descriptions	Term	Type	Identity
AutoFact	Fumarylacetoacetase [Medicago truncatula]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	uncharacterized protein loc100817986	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Fumarylacetoacetase, C-terminal	IPR002529	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Fumarylacetoacetase	IPR005959	-	-
Sma3	Fumarylacetoacetase, C-terminal-related	IPR011234	-	-
Sma3	Fumarylacetoacetase, N-terminal	IPR015377	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABT0

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MTTMKSFIPISPDSHFSLQNLPYGVFKPNQAAEARPGVAIGEYVLDLSVLSRAGLFNGPLLSRSDCFLQPSLNAFMAMGKPAWKEARGTIQKLLSVDEPVLRDNVELQKSALLPMSQVQLMLPAVIGDYTDFFTSKYHTMNCGIIFRGPENPLPPNWLHLPVAYHGRASSVVISGTDLHRPRGQKRPMGTPTPGFGPSVKLDFELEMAMLVGPGNELGTSVSVDDAADHIFGLVLMNDWSARDIQAWEYQPLGPFLGKSFGTSISPWIVTLEALEPFTCEAPVQDPPPLPYLTGKSSRTYDIPLEVALKPAGEEKASVICKSNFKHLYWTIEQQLAHHTINGCNLRSGDLLGSGTISGPEPESFASLLELSWDGKKPLKLGNNISRTFVEDGDEVILTACCQGDGYKVGFGTCSGKILPAIS*

Protein Length: 424

Fln nts: CGTCGTGACCTTGGTTGTGACCTTGGGTGTAAGTGGTTTCATTAATAAACACTGATTGTCACTAATCTTAGTAGAAGCGATCTCACTGTCTCGCGAGTTTCAGCTGAATTTGAGTTCGTCCGGGAAGAAGAGCAGAGCAGAACAGATAG_-_ATGACTACCATGAAATCTTTCATCCCCATAAGTCCGGACTCCCATTTCTCTCTCCAGAATCTGCCCTATGGAGTCTTCAAGCCCAACCAAGCGGCCGAAGCGCGCCCTGGTGTGGCCATTGGCGAGTATGTGTTGGACCTCAGTGTTCTGTCTCGAGCTGGCCTTTTCAATGGACCTCTGCTCAGTAGATCCGACTGCTTCCTTCAGCCATCTCTGAATGCTTTCATGGCTATGGGAAAGCCTGCATGGAAGGAGGCACGCGGAACAATTCAGAAACTTTTGTCAGTTGATGAACCAGTCTTGCGAGATAATGTCGAATTGCAGAAAAGTGCATTGTTACCAATGAGTCAGGTTCAGTTGATGCTGCCTGCTGTAATAGGGGACTATACAGACTTCTTTACCTCCAAGTATCACACAATGAACTGTGGAATCATATTTCGTGGTCCTGAAAATCCTCTTCCTCCAAACTGGCTTCATCTTCCAGTTGCATATCATGGGAGAGCATCCTCTGTTGTTATCTCTGGAACAGATCTTCACAGACCTAGAGGTCAAAAACGTCCAATGGGCACACCTACACCAGGATTTGGACCAAGTGTGAAACTTGATTTTGAGCTAGAAATGGCTATGCTGGTTGGACCTGGAAATGAGTTGGGAACGTCTGTGAGTGTGGATGATGCAGCTGATCATATTTTTGGGCTGGTTCTAATGAATGATTGGAGTGCAAGGGATATACAGGCGTGGGAATATCAACCACTTGGGCCATTTTTGGGAAAGAGCTTTGGAACAAGCATCTCACCCTGGATTGTCACTCTAGAGGCCTTAGAACCTTTCACCTGTGAAGCACCTGTACAGGATCCACCTCCCCTGCCCTATCTCACTGGGAAAAGTAGCAGGACCTATGATATCCCTTTAGAGGTTGCCTTAAAACCAGCCGGGGAAGAGAAAGCTTCTGTTATTTGTAAGAGCAACTTTAAACACCTATATTGGACAATTGAACAACAACTTGCACACCATACCATCAATGGTTGTAATTTGAGGTCTGGAGATTTGCTAGGATCTGGAACCATAAGTGGGCCTGAGCCTGAAAGTTTTGCTTCCCTATTAGAGCTATCATGGGATGGGAAGAAGCCACTGAAACTTGGAAATAATATCTCTCGAACATTTGTGGAAGATGGTGATGAGGTCATTTTAACAGCATGCTGTCAGGGAGATGGATATAAGGTGGGCTTTGGTACATGCTCTGGAAAGATACTACCTGCAATTTCCTGACCAGTAAAGTTATAATCTTTGTTTCCTATTATATGGCACATCTTCAAGACTCTGTTGGGTGAATTCTTTTAGGGAGGCTCAATTGTGATATAGTATGTGCTTCAGCAGGACATTATTTATTGGTAATTCTATTCTAGGTAATGAACTAAAAGCAGCAGAATTGTCAAAGGAATTGGCTAATTTTGTAATTGGTCATAAGTTACATACCAGATTGTTAGTTGCCCAATATGGTGATGGCTACCGGGCAGTAGTATCATGCCTTACTGATTCTGAGTCTTTGTGGTCCCCTGTTTTAAACCTTGTTGCCTATCACGTTGGTAATGCTCACTGTGTTGGCTTTTATCTTTCATTCATCAGTTCTTTGGCTGAGACTTTTTATTCTTCACTTACCTTGCTTGTTGCTATGGTGGATTTTTTGTATTTACAACTACCAAATGCGTGAGCAAATAATATAGGTGTGTAGGGTTAAGTCTGCGAGTTCGTAGGTTTTTCTACAGTGCTTGTTGGTAGGAGCTGAGAATTTAAGACGACTATATCTTGAAAAAGTTGTTGAAAAATGTTAGTTTCTGAAGCAATTCTATGACAACTTGTCTAGAAGTTGAATGTTGTTTACATTGGGTTAATTTCAGGCTCTCATAATATACACAATTTTT

Fln Alignment:

Contig11894___TMKSFIPISPDSHFSLQNLPYGVFKPNQAAEARPGVAIGEYVLDLSVLSRAGLFNGPLLSRSDCFLQPSLNAFMAMGKPAWKEARGTIQKLLSVDEPVLRDNVELQKSALLPMSQVQLMLPAVIGDYTDFFTSKYHTMNCGIIFRGPENPLPPNWLHLPVAYHGRASSVVISGTDLHRPRGQKRPMGTPTPGFGPSVKLDFELEMAMLVGPGNELGTSVSVDDAADHIFGLVLMNDWSARDIQAWEYQPLGPFLGKSFGTSISPWIVTLEALEPFTCEAPVQDPPPLPYLTGKSSRTYDIPLEVALKPAGEEKASVICKSNFKHLYWTIEQQLAHHTINGCNLRSGDLLGSGTISGPEPESFASLLELSWDGKKPLKLGNNISRTFVEDGDEVILTACCQGDGYKVGFGTCSGKILPAIS
D5ABT0________________SLVSFLNIPEDSHFSMQNLPYGVFRPTPEQQPRPGVAIGEYVLDLSALARAGLFHGPVLKGSDCFLQPSLNAFMAMGKPAWKEARGTIQKLLSVDEPALRDNAELQKSALLPMSQVQLMLPAVIGDYTDFFTSKYHTMNCGIIFRGPESPLPPNWLHLPVAYHGRASSVVISGTDLHRPRGQKRPVGKPTPGFGPSAKLDFELEMAMLVGPGNELGTSVSVDDAADHIFGLVLMNDWSARDIQAWEYQPLGPFLGKSFGTTVSPWIVTLEALQPFTCEAPVQDPPPLPYLTGKSCRTYDIPLEVALKPAGEDKSSVVCKSNFKHLYWTIEQQLAHHTINGCNLRPGDLLGSGTISGPEPESFGSLLELSWDGKNPLKLGNNISRTFVEDGDEVILTACCQGDGYKVGFGTCSGKILPAIS

SNPs (tot: 124)

Position	A %	C %	G %	T %	Probability
77	66	33			1.0
79	66			33	1.0
80	66	33			1.0
82		66		33	1.0
85		33		66	1.0
88		66	33		1.0
89	66		33		1.0
95	33			66	1.0
97			66	33	1.0
99	33		66		1.0
163	85		14		0.993533
167	85			14	0.993533
168	85		14		0.993533
170		14		85	0.993533
175			14	85	0.993533
178	85		14		0.993533
181	18	72	9		0.999994
183		81		18	0.999994
216		15		84	0.999986
219			84	15	0.999986
220		84	15		0.999986
221		84	15		0.999986
224	84		15		0.999986
227		15	84		0.999986
229		15	84		0.999986
247			69	30	1.0
274	81	18			1.0
275			18	81	1.0
277		18	81		1.0
279		81		18	1.0
282		18	81		1.0
283		18		81	1.0
284	81			18	1.0
289		18		81	1.0
292			81	18	1.0
293	81	18			1.0
294	18	81			1.0
539			88	11	0.923564
552			10	90	0.90298
555			10	90	0.90298
557			10	90	0.90298
563		90		10	0.90298
564	90		10		0.90298
565	90		10		0.90298
566		10	90		0.90298
568	90		10		0.90298
572		60		40	1.0
573	90			10	0.90298
740	66	33			0.997452
741			33	66	0.997452
824		33		66	0.997452
827		33	66		0.997452
833		33		66	0.997452
834			66	33	0.997452
835		66		33	0.997452
836	66		33		0.997452
846	66	33			0.997452
847	33			66	0.997452
948	75		25		0.996473
952		75	25		0.996473
956		75		25	0.996473
961		25		75	0.996473
1003		75		25	0.996473
1096	75	25			1.0
1098	62	12		25	1.0
1099			87	12	0.992554
1100	75			25	1.0
1101		25	75		1.0
1102	75	12	12		0.975346
1103	62	25		12	1.0
1104	62			37	1.0
1105		12	87		0.992554
1107	12	87			0.992554
1109		12	12	75	0.975346
1113		12		87	0.992554
1114			87	12	0.992554
1115		12		87	0.992554
1116	12			87	0.992554
1124	88	11			0.923564
1126	88	11			0.923564
1128		88	11		0.923564
1130	88	11			0.923564
1134		11		88	0.923564
1135	88			11	0.923564
1136	88		11		0.923564
1137	88			11	0.923564
1141		88		11	0.923564
1142		11		88	0.923564
1166			10	90	0.90298
1170	66	8		25	1.0
1171		66	16	16	0.999991
1175	72		9	18	0.999994
1177		9	18		0.999994
1178	81		18		0.999994
1180		81		18	0.999994
1181	81		18		0.999994
1185	81	18			0.999994
1293		83	16		0.999991
1294	83			16	0.999991
1300	83	16			0.999991
1306	83	16			0.999991
1307	84	5		10	0.999846
1308	84		15		1.0
1311	85	10	5		0.999793
1442	16	8	75		0.99999
1450		75		25	1.0
1491	7	30	61		1.0
1494		38	61		1.0
1495	69		30		1.0
1496	69			30	1.0
1497			30	69	1.0
1498	30			69	1.0
1500		30		69	1.0
1503			30	69	1.0
1504	69		30		1.0
1505		30	69		1.0
1506			69	30	1.0
1508	69			30	1.0
1509		30	69		1.0
1510	30		69		1.0
1649		33		66	1.0
1705		35	65		1.0
1851			75	25	0.996473
1852			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain