SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9379

Length: 1027 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene9379

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18039	24/28
SustainPine v2.0	sp_v2.0_unigene59775	3/28

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LOB domain-containing protein 18 [Arabidopsis thaliana] sp\|O22131.2\|LBD18_ARATH RecName: Full=LOB domain-containing protein 18; AltName: Full=ASYMMETRIC LEAVES 2-like protein 20; Short=AS2-like protein 20 gb\|AAL38036.1\|AF447891_1 LOB DOMAIN 18 [Arabidopsi	-	-	3.00018e-42	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	protein	-	-	0.0	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	xylem development	GO:0010089	Biological Process	0.0	84%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3	Oleosin	IPR000136	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Lateral organ boundaries, LOB	IPR004883	-	-
Sma3	Pre-SET domain	IPR007728	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Uncharacterised conserved protein UCP038127, LOB	IPR017394	-	-
Sma3	Asymmetric leaves, AS2/LOB	IPR017414	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9D3

Fln msg: Separated hits, possible frame ERROR between 404 and 424, atg_distance in limit (1-15): atg_distance = 16, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 194 - 219

Fln protein: MFAPYFGSEEGPVHFAAVHKIFGASNVSKLLLHIPMQERCEAVVTISYEAEARLRDPVYGCVAHIYALQQQVASLQAELAFMQAELASRVSSGSASASAIYPVMSVSSYSQHPHQLPAPYHMIPQPxxxxxxxxLNEENTHGVTNSMERKFSMSPSDNSSTQMEVLQRCRNLDKTGEDSKELEALAHALLLRG*

Protein Length: 195

Fln nts: CGTCGTGACCTTGGCTGTCACTC_-_ATGTTCGCTCCATACTTCGGTTCTGAAGAAGGCCCAGTGCATTTCGCCGCAGTTCATAAGATCTTTGGGGCGAGTAATGTATCCAAGCTTTTACTGCATATCCCCATGCAAGAACGTTGCGAGGCGGTTGTTACCATATCGTATGAGGCAGAGGCACGTCTCCGAGATCCTGTCTATGGCTGCGTTGCACATATTTACGCCTTGCAGCAACAGGTTGCAAGTTTGCAGGCGGAGTTGGCATTCATGCAAGCAGAGCTGGCAAGCCGCGTGTCATCCGGATCAGCATCGGCCTCCGCGATTTATCCTGTCATGTCGGTTTCATCGTACAGTCAGCATCCACATCAGCTCCCTGCACCATACCATATGATCCCTCAGCCATAxxxxxxxxxxxxxxxxxxxxxCCTGAACGAGGAGAACACTCACGGCGTCACCAATTCCATGGAACGCAAATTTTCCATGTCTCCCAGTGATAATTCATCGACACAAATGGAGGTCCTCCAAAGATGCAGAAATCTTGACAAAACTGGAGAAGATAGCAAAGAGCTTGAGGCTTTGGCCCATGCTCTTCTTCTGAGAGGTTAA___ACTTTTCCAAATTTAGCAAACCTTAATAATTTCATTGCGTTGACCTGTCACCGGCGCCAAATTGCTTCCAGATACATCTGGATTTGCTTTCGTTCAGTTTATTTCTGCCAAAGGAACTACGAAGAGTGCAAATCTGGCCACGAATTTGGGGGAAGATACTTTGATGGTAGGTAGTTTCGTAAAAGGAATATGGATAGATGGCGACGAATTTGGAGGTAGATACTTCGGCCGTAGTTAGTTTTGTAAAAGGAATATGGATAGAGAGAGGGAGTAAGTTTAGAGATAATGAAATGAAGGAATGTACATGTAAAGCCATCTACCAACCGTGGAGAGGAGCCGGAGATGGAATTCCGCATTTCACTTTACCTATGTTGTAATATATTTTAACCAAATTAACGGCTTTGTCTCTATCGTTTTTAACGTT

Fln Alignment:

Contig9379___MFAPYFGSEEGPVHFAAVHKIFGASNVSKLLLHIPMQERCEAVVTISYEAEARLRDPVYGCVAHIYALQQQVASLQAELAFMQAELXXXXXXXXXXXXXIYPVMSVSSYSQHPHQLPA----PYHMIPQPYxxxxxxxLNEENTHGVTNSMERKFSMSPSDNSSTQMEVLQRCRNLDKTG
D5A9D3_______________VFAPYFDSDEGAENFAAVHKIFGASNVSKLLQHIPIPERSEAVVTISYEAQARLRDPVYGCVAHIFALQQQVASLQAELTFVQAQLASRVASGSASTSMNFPVMSSSSYNQHPHQFPAQISPPCHPIPQPHxxxxxxxIKEENACGFANSMDSEFSEPPRDNSSPQMKILQRCRYREENG

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
189		33	66		0.997452
190	66		33		0.997452
193		66	33		0.997452
196	33			66	0.997452
198		33		66	0.997452
199	66			33	0.997452
208	33		66		0.997452
209		33		66	0.997452
498	75			25	0.996473
501			25	75	0.996473
503	75		25		0.996473
509	75			25	0.996473
555	85	14			0.993533
557	85			14	0.993533
558	85	14			0.993533
562	85		14		0.993533
563	14		85		0.993533
565	85	14			0.993533
566	85			14	0.993533
567	85			14	0.993533
572			16	83	0.999991
573	8		8	16	0.999991
574		16		83	0.999991
576	83			16	0.999991
578	16		75	8	0.99999
580		16		83	0.999991
586		83		16	0.999991
588		83	16		0.999991
589	83			16	0.999991
590		16		83	0.999991
591	16		83		0.999991
655		84	10	5	0.999846
668		52		47	1.0
670	85		9	4	0.999726
671	85	4		9	0.999726
672	90	9			0.999872
673		4	9	85	0.999726
679		90	9		0.999842
681	90			9	0.999842
692		9	90		0.999842
1019	20			20	0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain