SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8921

Length: 1161 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene8921

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene31044	30/37
SustainPine v2.0	sp_v2.0_unigene63882	7/37

Source	Descriptions	Term	Type	Identity
AutoFact	expansin-like B1 [Arabidopsis thaliana] sp\|O23547.2\|EXLB1_ARATH RecName: Full=Expansin-like B1; Short=At-EXPR1; Short=AtEXLB1; Short=AtEXPR1; AltName: Full=Ath-ExpBeta-3.1; Flags: Precursor gb\|AAO64802.1\| At4g17030 [Arabidopsis thaliana] dbj\|BAF00176.1\| E	-	-	51%
FL-Next	tr=Expansin-like protein; Cunninghamia lanceolata (China fir).	-	-	50%
Blast2go	expansin-like b1	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3		IPR005132	-	-
Sma3	Major pollen allergen Lol pI	IPR005795	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A2ICD7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 50 aas, putative chimeric sequence, your sequence is shorter than subject: 226 - 272

Fln protein: MASPMAVRCSYSLLLYILLLQNLVMYLGTRAEPYVTSRAAYYSSAGGLGTEGGACGYGFFGRNLNGGDVAAVAQLYRNGTGCGACYKVRCTNKDLCRSEGVKIVVTDYGQGDRTDFIMSLHGYSKLGRPDKVSQLISLGVVEIEYKRIPCQYEGYNLMFKIDSSSNFPEYLALIVLYQAGQKDVLAIQVRQEESYDWKAMYRSHGAVWNVVTPPRGVSFSASLSG*

Protein Length: 227

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCATACTTAAATAGAGTATTCTCTCTAAGCATTTCCAAAAGTTGTCCCTCGTCTTGTATTTACTTCA_-_ATGGCTTCCCCAATGGCTGTCAGATGCTCTTACAGCCTGCTACTCTACATTCTGTTATTGCAGAACCTTGTCATGTATCTCGGCACAAGAGCAGAACCGTACGTAACATCAAGAGCCGCATACTATAGCAGTGCAGGTGGTCTGGGAACCGAAGGTGGAGCGTGTGGATATGGGTTCTTTGGCAGAAATCTGAATGGAGGTGATGTAGCTGCTGTCGCTCAGTTATACAGAAATGGAACCGGATGCGGTGCCTGCTACAAGGTAAGATGTACCAATAAAGATCTCTGCAGAAGCGAAGGAGTGAAAATTGTTGTGACAGATTATGGGCAAGGCGACCGAACTGATTTCATCATGAGCCTTCATGGGTATTCGAAGCTTGGCCGCCCAGACAAAGTTAGCCAACTCATATCGTTGGGTGTGGTGGAGATCGAGTATAAACGGATACCTTGCCAATACGAGGGCTACAATCTCATGTTTAAGATCGATAGCAGTAGCAACTTTCCAGAGTACTTGGCATTGATAGTTTTGTATCAGGCAGGGCAAAAAGACGTTCTGGCTATTCAAGTCAGACAGGAGGAATCGTACGACTGGAAAGCTATGTACCGAAGCCACGGGGCCGTGTGGAACGTAGTAACACCTCCAAGGGGCGTCTCTTTTTCTGCCAGTCTTTCTGGTTAG___TGATGGGAAGAGAGAGGAATGGGTGTCGAGCGCCCATGTAATACCGGCTAACTGGAAGGCAGGGGCCATATACGACTCCGGCATTCAGCTCAATTAACTCGTGGGGTAGATTTGGCTTGCTATCCTCATAAGTTGTAGTCTGGTAAGAAAGAAAGTGTGACGTTAGGATGTTTGATAATTTAGTTTTTGATGTTAAGATATTACCGACTGCAACATCTGTTATTAATAGGTTTCATTTCTAGATTTCTGTGTAAAGGAATTTTGGAGTTCGAGTGTGCTAGATTTGAAGTTGCTTCTTGATTCTAAGAATCAGAGTTGCTTGCTTCTTAGTTGTATAAGGTTAATACATTGTACTTTCTAAAATCAGAAAATAAA

Fln Alignment:

Contig8921___LNGGDVA-AVAQLYRNGTGCGACYKVRCTNKDLCRSEGVKIVVTDYGQGDRTDFIMSLHGYSKLGRPDKVSQLISLGVVEIEYKRIPCQYEGYNLMFKIDSSSNFPEYLALIVLYQAGQKDVLAIQVRQEESYDWKAMYRSHGAVWNVVTPPRG
A2ICD7_______________LNSGDVATASAKIYREGVGCGGCYQIRCTDPAICSKSGVKVVVSDLTQNNQTDFVLSTRTFSKMAQPTKSSQLIKMGLVDTEYKRIPCEYPGKNMTVKIDKMSNYPYFLAVQFLYQGGQTDITGVEVAQVGTSNWKFMTRNYGAVWSMQQPPEG

SNPs (tot: 97)

Position	A %	C %	G %	T %	Probability
26	33		66		0.997452
29	33		66		0.997452
32	33	66			0.997452
33	33			66	0.997452
35			66	33	0.997452
36	33		66		0.997452
38	33			66	0.997452
42	66			33	0.997452
43		66		33	0.997452
46	66			33	0.997452
84			66	33	0.997452
263	66			33	0.997452
264		33	66		0.997452
270		33	66		0.997452
272			66	33	0.997452
280		33	66		0.997452
282		33		66	0.997452
283	66			33	0.997452
284		33		66	0.997452
285	33		66		0.997452
299	80			20	0.995493
300	80		20		0.995493
302		20		80	0.995493
306	80		20		0.995493
307	80	20			0.995493
310		20	80		0.995493
312			80	20	0.995493
313		20	80		0.995493
314	20			80	0.995493
372	77		22		0.999999
373	77			22	0.999999
374		22	77		0.999999
377	77		22		0.999999
379		22	77		0.999999
380	77	22			0.999999
384	77		22		0.999999
385		77	22		0.999999
387	77			22	0.999999
388	77		22		0.999999
392	77	22			0.999999
393	77			22	0.999999
394		22	77		0.999999
434	87		12		0.992554
440	12		87		0.992554
497			85	14	0.993533
502		14	85		0.993533
505	87		12		0.992554
506	87			12	0.992554
507	87	12			0.992554
510			12	87	0.992554
515	87			12	0.992554
516	87			12	0.992554
517		87	12		0.992554
518			12	87	0.992554
522	87		12		0.992554
525	12		87		0.992554
526		12		87	0.992554
528		12	87		0.992554
529	12		87		0.992554
533			12	87	0.992554
535		25	75		1.0
540		25	75		1.0
562		27		72	1.0
564		72		27	1.0
566	72		27		1.0
567	72			27	1.0
568			27	72	1.0
570		81		18	0.999994
571		27	72		1.0
572	72			27	1.0
573			72	27	1.0
579	72			27	1.0
582	72	27			1.0
586	27	72			1.0
635		10		90	0.90298
636	10		90		0.90298
640			70	30	1.0
644			30	70	1.0
657		33	66		1.0
669		12		87	0.992554
725	14		85		0.993533
732			66	33	1.0
742	50		50		1.0
759	40		60		1.0
774		40		60	1.0
791		11	88		0.999952
793		5	17	76	1.0
828		90		10	0.999898
835	92	7			0.999602
896	11		88		1.0
900			84	15	1.0
919		92	7		0.999664
927	8		88		0.999262
1013			10	90	0.999898
1049	88		11		0.999952
1075	88	11			0.999952
1077	88	11			0.999952

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain