SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene272

Length: 373 nt

UniGene Fasta

>uagpf_v2_unigene272
TGACCTTGGCTGTCACTCATTTGTTTTTGTCCCCCCTATTGCTACAGAGGTTGTGGAGGAGTTTCGAGTCATTTGGAGAGTGTTTCTGAGAGAGTTTGTGGTATAATTTGAAGGAATGATAATGGGGTCATCGAGTAGGAGTTCAGGGAATACTGGCGAGGAAGGTTTGCCGCCAGGATTCAGGTTCCATCCCACGGATGAAGAATTGGTGTCTTGCTACCTGGTCCGGAAGGTTCTCGACAACAATTTCTCAGGGATCGCCATTGCCGAGGCCGACCTGAATAAGTGCGAACCATGGGATCTTCCAGAAAAGGCAAAGATGGGAGAGAAAGAATGGTACTTCTTCAGCTTGCGAGACCGCAAGTATCCAACA

Ace file of the UniGene uagpf_v2_unigene272

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26430	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	NAM protein n=1 Tax=Petunia x hybrida RepID=Q40880_PETHY	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	no apical meristem-related protein	-	-	82%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Ribosomal protein L24e-related	IPR000988	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Cytochrome c oxidase biogenesis protein Cmc1-like	IPR013892	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVZ2

Fln msg: Distance to subject end: 98 aas, your sequence is shorter than subject: 86 - 186

Fln protein: MIMGSSSRSSGNTGEEGLPPGFRFHPTDEELVSCYLVRKVLDNNFSGIAIAEADLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPT

Protein Length: 87

Fln nts: TGACCTTGGCTGTCACTCATTTGTTTTTGTCCCCCCTATTGCTACAGAGGTTGTGGAGGAGTTTCGAGTCATTTGGAGAGTGTTTCTGAGAGAGTTTGTGGTATAATTTGAAGGA_-_ATGATAATGGGGTCATCGAGTAGGAGTTCAGGGAATACTGGCGAGGAAGGTTTGCCGCCAGGATTCAGGTTCCATCCCACGGATGAAGAATTGGTGTCTTGCTACCTGGTCCGGAAGGTTCTCGACAACAATTTCTCAGGGATCGCCATTGCCGAGGCCGACCTGAATAAGTGCGAACCATGGGATCTTCCAGAAAAGGCAAAGATGGGAGAGAAAGAATGGTACTTCTTCAGCTTGCGAGACCGCAAGTATCCAACA

Fln Alignment:

Contig272___LPPGFRFHPTDEELVSCYLVRKVLDNNFSGIAIAEADLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYP
A9NVZ2______________LPPGFRFYPTDEELMVHYLCKRVASQPFPIPIIAEIDLYKFDPWQLPEKALFGEKEWYFFSPRDRKYP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
39		20		80	0.995493
40	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain