SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene165

Length: 513 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene165
CGTCGTGACCTTGGCTGTCACTCACTCGCTCAAGCTGGGCCAAGGCCCCGCCAGATGCAGAGCAGAAATGGGGTATGTGGCGGCCGCCCACCGTCGTGACCTTGGCTGTCACTCAAGCCGTTAAATTAGCGGTGTCCGCAGCGTTCCAGGAGCTGCCAGATCTGGAGAGGATTGAAGGGCTGGTCGAACCCCAAAATGTGGCGTCGCAGAGAGTTTTGGAGAAAGTAGGATTTGTTAAGGAAGGCTTGCTGTCCAGATACTTGACTTTCAAGGGAAAAACCAGGGATTTCTTTGCTTATCGGATTCTCTCTGCTGATTTGCCAGTCGCTGTTCCTCCATAAGCCCCCATCCGTTTAACTATGGTTTCCTAATATGTGTAACACATCTACTTCTGTGTGATCCCGTGGTTAACACAACTTGAATTCAGGCTCTGGTAACCATTAAACCTCAGAACAGTTTGTGTAAGTGGGTAACACCAATAGCGCGGTGTTGGAGGTTTAATGTGTGGTATTG

Ace file of the UniGene uagpf_v2_unigene165 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19963	1/18
SustainPine v2.0	sp_v2.0_unigene21586	13/18
SustainPine v2.0	sp_v2.0_unigene26971	1/18
SustainPine v2.0	sp_v2.0_unigene49937	1/18

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] dbj\|BAB01471.1\| alanine acetyl transferase-like protein [Arabidopsis thaliana] gb\|ABN04781.1\| At3g22560 [Arabidopsis thaliana] gb\|AEE76653.1\| GCN5-related N-acetyltransferase (G	-	-	2.0e-13	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	n-	-	-	3.10163e-35	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	3.10163e-35	70%

Source	InterPros	Term	Type	Identity
Sma3	GNAT domain	IPR000182	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW96

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 113 - 179

Fln protein: S*PWLSLTRSSWAKAPPDAEQKWGMWRPPTVVTLAVTQAVKLAVSAAFQELPDLERIEGLVEPQNVASQRVLEKVGFVKEGLLSRYLTFKGKTRDFFAYRILSADLPVAVPP*

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTCGCTCAAGCTGGGCCAAGGCCCCGCCAGATGCAGAGCAGAAATGGGGTATGTGGCGGCCGCCCACCGTCGTGACCTTGGCTGTCACTCAAGCCGTTAAATTAGCGGTGTCCGCAGCGTTCCAGGAGCTGCCAGATCTGGAGAGGATTGAAGGGCTGGTCGAACCCCAAAATGTGGCGTCGCAGAGAGTTTTGGAGAAAGTAGGATTTGTTAAGGAAGGCTTGCTGTCCAGATACTTGACTTTCAAGGGAAAAACCAGGGATTTCTTTGCTTATCGGATTCTCTCTGCTGATTTGCCAGTCGCTGTTCCTCCATAA___GCCCCCATCCGTTTAACTATGGTTTCCTAATATGTGTAACACATCTACTTCTGTGTGATCCCGTGGTTAACACAACTTGAATTCAGGCTCTGGTAACCATTAAACCTCAGAACAGTTTGTGTAAGTGGGTAACACCAATAGCGCGGTGTTGGAGGTTTAATGTGTGGTATTG

Fln Alignment:

Contig165___VTQAVKLAVSAAFQELPDLERIEGLVEPQNVASQRVLEKVGFVKEGLLSRYLTFKGKTRDFFAYRILSAD
A9NW96______________VTQAVKLGVSAAFQDLPDLERIEGLVEPQNLASQRVLEKAGFVKEGLLSRYLNFKGKTRDFYVYRILSAD

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
287		23	7	69	1.0
362		75	8	16	0.99999
379	72		9	18	0.999994
411	81	18			0.999994
412	81			18	0.999994
413			81	18	0.999994
414	18		81		0.999994
415		18		81	0.999994
417	81	18			0.999994
419	18		81		0.999994
422	20		80		0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain