SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene153

Length: 1013 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene153

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2384	13/14

Source	Descriptions	Term	Type	Identity
AutoFact	Calcium-dependent protein kinase, putative n=1 Tax=Ricinus communis RepID=B9R931_RICCO	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	calcium-dependent protein	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium/calmodulin-dependent protein kinase.	EC:2.7.11.17	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	87%
Blast2go	calmodulin-dependent protein kinase activity	GO:0004683	Molecular Function	87%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	87%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S16	IPR000307	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Parvalbumin	IPR008080	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ38

Fln msg: Distance to subject end: 239 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 289 - 529

Fln protein: MGNCCGSGGGSKTVRKERRPNPFSQDFNPAGAPRVSVLKGAAVGRNIHDKYVLGRELGRGEFGITYLCTDKETEEMLACKSISKRKLRTAIDIEDVRREVAIMNNLPQHPNIVTLKATYEDDHAVHLVMELCEGGELFDRIVARGHYSERAAAAVTRTIVEVVQMCHKNGVMHRDLKPENFLFANKKENSALKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVAQAILRGQIDFKRDPWPKVSEHAKGLVRQM

Protein Length: 290

Fln nts: ATCAAGCGATACAGAGGAGTTTCATGGCGTGGCAGGGTTTGAAGACTCCGCGAAGCATAGACCTCTAATGAAATGACAGACGGGAAAGGTCAGCCAAGTTATGCCGCGTTAGGGTTTTGAAGCCGCGGCGTTCTGGCGGAAAATAA_-_ATGGGGAACTGCTGCGGATCTGGCGGAGGATCCAAGACTGTACGAAAGGAACGCAGGCCGAATCCGTTCTCGCAGGACTTTAACCCTGCCGGAGCACCCCGGGTTTCGGTTTTGAAAGGAGCGGCCGTTGGACGCAACATACATGATAAGTATGTGCTGGGAAGAGAGCTCGGCAGGGGTGAGTTCGGCATTACTTACCTTTGTACTGACAAGGAGACTGAAGAAATGCTTGCCTGCAAGTCTATTTCCAAGCGGAAGCTCAGAACTGCGATAGATATCGAGGATGTGAGGCGAGAAGTAGCTATAATGAACAATTTGCCTCAGCATCCGAACATTGTTACCTTGAAAGCTACGTACGAGGACGACCACGCTGTGCATCTCGTCATGGAGCTCTGCGAGGGTGGAGAGCTATTTGACAGGATCGTTGCTAGAGGGCATTACAGCGAGCGTGCCGCGGCTGCTGTTACACGTACTATTGTTGAAGTTGTTCAGATGTGTCACAAAAACGGGGTGATGCATCGGGACCTCAAACCTGAGAATTTTCTGTTTGCGAATAAAAAAGAGAATTCAGCTTTGAAGGCTATTGATTTCGGTCTTTCTGTGTTCTTTAAGCCAGGCGAGCGATTTTCTGAAATAGTGGGTAGTCCATATTACATGGCACCAGAAGTCCTGAAGCGGAACTATGGACCAGAGGTTGATGTGTGGAGTGCAGGGGTCATTCTGTACATTTTATTGTGTGGAGTGCCACCATTCTGGGCTGAAACGGAGCAGGGGGTTGCGCAGGCCATTCTTCGGGGTCAGATAGATTTCAAAAGAGATCCATGGCCAAAAGTTTCTGAGCATGCCAAGGGTCTTGTCCGGCAGATG

Fln Alignment:

Contig153___PNPFSQDFNPAGAPRVSVLKGAAVGRNIHDKYVLGRELGRGEFGITYLCTDKETEEMLACKSISKRKLRTAIDIEDVRREVAIMNNLPQHPNIVTLKATYEDDHAVHLVMELCEGGELFDRIVARGHYSERAAAAVTRTIVEVVQMCHKNGVMHRDLKPENFLFANKKENSALKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVAQAILRGQIDFKRDPWPKVSEHAKGLVRQM
C0PQ38______________PNGRKRDNVGGDVAKIPVLKGC-LEQSVEERFLLDRELGRGEFGITYLCTDRESRELLACKSISKRKLKTAIDIEDVRREVAIMKHLPKNNNIVSLKATCEDDNAVHLLMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSVFFKPGDRFSEIVGSPYYMAPEVLKRNYGPEIDVWSAGVILYILLCGVPPFWAESEQGVAQAILRGFVDFKREPWPKISETAKSLVRQM

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
462	71		28		1.0
463	71			28	1.0
464		28		71	1.0
465			28	71	1.0
472		71		28	1.0
473	71		28		1.0
477	71		28		1.0
482			71	28	1.0
483	71	28			1.0
609			71	28	1.0
614	28	71			1.0
615		28		71	1.0
616		28	71		1.0
619	71		28		1.0
620		71	28		1.0
621	71	28			1.0
622		72		18	0.999994
623	18		81		0.999994

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain