SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene143

Length: 1488 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene143

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6258	12/40
SustainPine v2.0	sp_v2.0_unigene14528	21/40
SustainPine v2.0	sp_v2.0_unigene18285	3/40

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Picea sitchensis RepID=A9NNT0_PICSI	-	-	82%
FL-Next	sp=Eukaryotic translation initiation factor 3 subunit G; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	initiation factor 3g	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	binding	GO:0005488	Molecular Function	79%
Blast2go	eukaryotic translation initiation factor 3 complex	GO:0005852	Cellular Component	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Translation initiation factor 3, subunit G	IPR017334	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNT0

Fln msg:

Fln protein: MEKVGDSKASAKVRWGELEEEDNEDLDFLLPPPKVIGPDENGVKKIIEYRFNDQGQKVQKTTTTRIRKVAKARLSKRALERREWRKFGDAVNEDTGSRLTMVSTEEILLERPKAPGAKEDDSRSGGGDPLAAALAGAAKGGAVLMVCRICGKKGDHWTSKCPYKDLAPAAAEGLGLDKPPQAPDSAAGSGAAGGKGAYVPPSLRAGATVDRTSDASNMRRRNDENSVRVTNLSEDTREADLQELFKPFGHITRVYVAVDQRTGMSRGFGFVNFANREDAQRAINKLNGYGYDNLILRVEWATPRQT*

Protein Length: 308

Fln nts: TCGTGACCTTGGCTGTCACTCAGCCTTTTGGGGCAATTGCAATTTTAATTGCCGGAGAAAAATCGATTCAGTGTACGTTCATACGCATATAGGCGCTGCGTTTTCTTTCTTTTACCTTTCGCTTAAATCACTGGTGCTGTGAGGTTTTGGGTTTGTGATCAGATAATCGAATCCACAGGCTGGGATAGGGGGAGGACGCCAGGAAGGAG_-_ATGGAGAAGGTGGGAGATAGCAAAGCTTCAGCGAAAGTGCGATGGGGAGAATTAGAGGAGGAGGACAACGAGGATCTGGATTTCCTGCTGCCGCCTCCCAAGGTGATCGGCCCTGACGAGAACGGCGTGAAGAAGATAATCGAGTACAGGTTCAACGATCAGGGCCAGAAGGTTCAGAAAACCACCACCACACGCATTCGCAAGGTGGCAAAGGCCAGGCTCAGCAAGCGAGCCCTCGAGCGGCGCGAGTGGCGCAAGTTCGGCGACGCCGTGAACGAGGACACAGGCAGCAGGCTTACCATGGTCTCTACTGAAGAGATCCTGCTCGAGCGGCCCAAGGCCCCTGGCGCCAAGGAGGATGACTCTAGGTCCGGTGGCGGCGATCCTCTCGCAGCCGCGCTTGCAGGGGCGGCCAAGGGCGGTGCCGTTCTCATGGTCTGTCGAATCTGTGGCAAAAAGGGTGATCACTGGACCTCAAAGTGCCCCTACAAAGACCTTGCCCCAGCCGCTGCGGAGGGCCTTGGTCTAGACAAACCCCCTCAAGCTCCTGACTCTGCCGCCGGCTCTGGTGCCGCCGGTGGCAAGGGAGCCTACGTTCCTCCTAGTCTTAGAGCCGGCGCCACGGTAGACAGGACCTCTGATGCTAGCAACATGAGGCGGAGAAACGACGAGAATTCCGTTAGGGTTACTAATTTGTCCGAGGATACCAGAGAGGCCGACTTGCAGGAGCTTTTCAAGCCGTTTGGTCACATTACGCGTGTCTATGTTGCCGTGGACCAGAGGACCGGGATGAGCAGGGGTTTTGGCTTTGTCAATTTTGCCAACAGGGAGGATGCACAGAGGGCTATTAATAAACTCAATGGCTATGGCTACGACAACCTCATTCTCAGAGTCGAATGGGCGACTCCTAGACAGACATAG___ACAAATGAATAACCCTAAATCCTAAACACAAATCCCCTTCGCATGAATACCAGACAAAGCGGGTTCTTTGTGGGATTTAGGGTAACTGCGGGTGATTTTCAGGTTCTGGATTTGAGATAGTTGCGTTTTTACCTTTTCTAGGGTTTTGTTTATCTTAATTTCATTTGAATGAACATATGCATAGTTTGTTGGTGGCAAGTTTTTTCCCCATGTTCCGTGTAACAGATCCAAATCTATTTCAAGTACTTTTATATGTTTACAGTCCCCAGTCTGTTTGCAAATTCAATCAAAATAATCAGCGAATGGTAAAGAAGCCCTAGAGCAACAATATGTTTGTTCATGTTATTAGGGAACTTTT

Fln Alignment:

Contig143___MEKVGDSKASAKVRWGXXXXXXXXXXXXXXXXXKVIGPDENGVKKIIEYRFNDQGQKVQKTTTTRIRKVAKARLSKRALERREWRKFGDAVNEDTGSRLTMVSTEEILLERPKAPGAKEDDSRSXXXXXXXXXXXXXXXXXXVLMVCRICGKKGDHWTSKCPYKDLAPAAAEGLGLDKPPQAPDXXXXXXXXXXXXXYVPPSLRAGATVDRTSDASNMRRRNDENSVRVTNLSEDTREADLQELFKPFGHITRVYVAVDQRTGMSRGFGFVNFANREDAQRAINKLNGYGYDNLILRVEWATPRQT
A9NNT0______________MEKVGDSKASAKVRWGELEEEDNEDLDFLLPPPKVVGPDENGVKKIIEFRFNDQGQKVQKTTTTRIRKVAKARLSKRALERREWRKFGDAVNEDTGSRLTMVSTEEILLERPKAPGTKEDDPRSGGGDPLSAALAGAAKGGAVLMVCRICGKKGDHWTSKCPYKDLAPAAAEGLGLDKPPQAADSAAGSGAPGGKGAYVPPSLRAGATVDRTSDTSNMRRRNDENSVRVTNLSEDTREADLQELFKPFGHITRVYVAVDQRTGMSRGFGFVNFANREDAQRAINKLNGYGYDNLILRVEWATPRQT

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
362		66		33	0.997452
363	66	33			0.997452
364	66		33		0.997452
812		25		75	0.996473
831	75		25		0.996473
833		25	75		0.996473
836	75	25			0.996473
887		75	25		0.996473
908		80		20	0.995493
910	80			20	0.995493
911		20	80		0.995493
913	80			20	0.995493
914			20	80	0.995493
918	80			20	0.995493
919			80	20	0.995493
920	80		20		0.995493
922	80	20			0.995493
923			80	20	0.995493
925		80		20	0.995493
930			11	77	0.968132
934	88		11		0.923564
935			88	11	0.923564
938		11	88		0.923564
942			11	88	0.923564
943			11	88	0.923564
945	88			11	0.923564
946	88		11		0.923564
947	11		77	11	0.968132
950		11	88		0.923564
951	11			88	0.923564
974		11		88	0.923564
988	77		22		0.999999
989			77	22	0.999999
990	77	22			0.999999
998			77	22	0.999999
1001	77	22			0.999999
1005			77	22	0.999999
1008		11	77	11	0.968132
1009		11	77	11	0.968132
1010	11	11	77		0.968132
1011	11		88		0.923564
1030		42		57	1.0
1044	90	10			0.90298
1050	90			10	0.90298
1051		10	90		0.90298
1227	53	46			1.0
1270		55	44		1.0
1396	14	71			0.984337
1400	71	28			1.0
1401			83	16	0.994512
1406		16		83	0.994512
1484	33	33			0.997753

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain