SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19612

Length: 200 nt

UniGene Fasta

>biog2_v2.0_unigene19612
ATGGGATTGAGATCAAAAGCAGTTGAGATAGCTGAAAAGCAGCTTGCCCCAGAGATGGAACTCTTAGCTTCAATAAAGTATTAGATAAGCTGCATGCTGTGCTCAATTAAGCAATCAATTTTGAAATGACAAGAAATATTTTGAAGATGAGGTTTTGACTAGAAAGATATTCATACTTCATTTGTTTAATGTTTTGCTTT

Ace file of the UniGene biog2_v2.0_unigene19612

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18147	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L13a n=3 Tax=Picea RepID=RL13A_PICMA	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	ribosomal protein l13a	-	-	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L13	IPR005822	-	0.0	-
Sma3	Ribosomal protein L13, eukaryotic/archaeal	IPR005755	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNL7

Fln msg: your sequence is shorter than subject: 28 - 206

Fln protein: MGLRSKAVEIAEKQLAPEMELLASIKY*

Protein Length: 29

Fln nts: ATGGGATTGAGATCAAAAGCAGTTGAGATAGCTGAAAAGCAGCTTGCCCCAGAGATGGAACTCTTAGCTTCAATAAAGTATTAG___ATAAGCTGCATGCTGTGCTCAATTAAGCAATCAATTTTGAAATGACAAGAAATATTTTGAAGATGAGGTTTTGACTAGAAAGATATTCATACTTCATTTGTTTAATGTTTTGCTTT

Fln Alignment:

biogeco2_mira_rep_c20842___LRSKAVEIAEKQLAPEMELLASIKY
A9NNL7__________________LRSKAVELAEKQLAPEMELLASLKY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain