SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19548

Length: 381 nt

UniGene Fasta

>biog2_v2.0_unigene19548
TTAACAGATGATAAACCTTTGACTCCCGAGTCCAAATTTTCTGATCTGGGTGCCGACTCTCTTGATACGGTAGAGATAGTAATGGCTCTTGAGGAGGAATTCAAAATCAGTGTTGAAGAAGAAAATGCTGGGAACATTACAACTGTGCAGGAAGCAGCTGATTTGATAGAAAGGCTCTCCTCTTCATCTTAGGTTGTGAAGTCTTGAATGGTGCATGCATGTTCCTTAAATGATGTCCAAGTGCACAACTGTTTATCATCGTGGCTGTTTTGTGGATCTGGTGTGCAATGAGTTGAGCCATGCCTGAAGAATAATTCGTTGTTCTTTTGAACATATTGATAATTAAGAACATTTCAAATTTGTCTAGGTTATTGATAGTTT

Ace file of the UniGene biog2_v2.0_unigene19548

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15363	3/6
SustainPine v2.0	sp_v2.0_unigene20810	3/6

Source	Descriptions	Term	Type	Identity
AutoFact	thioredoxin family protein [Arabidopsis thaliana] emb\|CAB87763.1\| putative protein [Arabidopsis thaliana] gb\|AAN41366.1\| unknown protein [Arabidopsis thaliana] gb\|AED92004.1\| thioredoxin family protein [Arabidopsis thaliana]	-	-	50%
FL-Next	sp=Acyl carrier protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	phosducin-like protein 3	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR012335	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKY4

Fln msg: your sequence is shorter than subject: 64 - 151

Fln protein: LTDDKPLTPESKFSDLGADSLDTVEIVMALEEEFKISVEEENAGNITTVQEAADLIERLSSSS*

Protein Length: 65

Fln nts: TTAACAGATGATAAACCTTTGACTCCCGAGTCCAAATTTTCTGATCTGGGTGCCGACTCTCTTGATACGGTAGAGATAGTAATGGCTCTTGAGGAGGAATTCAAAATCAGTGTTGAAGAAGAAAATGCTGGGAACATTACAACTGTGCAGGAAGCAGCTGATTTGATAGAAAGGCTCTCCTCTTCATCTTAG___GTTGTGAAGTCTTGAATGGTGCATGCATGTTCCTTAAATGATGTCCAAGTGCACAACTGTTTATCATCGTGGCTGTTTTGTGGATCTGGTGTGCAATGAGTTGAGCCATGCCTGAAGAATAATTCGTTGTTCTTTTGAACATATTGATAATTAAGAACATTTCAAATTTGTCTAGGTTATTGATAGTTT

Fln Alignment:

biogeco2_mira_rep_c20577___LTDDKPLTPESKFSDLGADSLDTVEIVMALEEEFKISVEEENAGNITTVQEAADLIERL
A9NKY4__________________LSDDKPLTPESKFSDLGADSLDTVEIVMALEEEFKISVEEENAGNITTVQEAADLIERL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
244	20		80		0.995493
274		20		80	0.995493
283		40		60	1.0
288	80		20		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain