SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19545

Length: 839 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene19545 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene81303	2/6
SustainPine v2.0	sp_v2.0_unigene82298	3/6
SustainPine v2.0	sp_v2.0_unigene82716	1/6

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock 70kDa protein 1/8 n=5 Tax=rosids RepID=F4KCE5_ARATH	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	heat shock 70kda protein 1 8	-	-	97%

Source	GOs	Term	Type	Identity
Blast2go	response to virus	GO:0009615	Biological Process	97%
Blast2go	protein folding	GO:0006457	Biological Process	97%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	97%
Blast2go	response to cold	GO:0009409	Biological Process	97%
Blast2go	response to heat	GO:0009408	Biological Process	97%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	97%
Blast2go	defense response to fungus	GO:0050832	Biological Process	97%
Blast2go	protease binding	GO:0002020	Molecular Function	97%
Blast2go	cell wall	GO:0005618	Cellular Component	97%
Blast2go	nucleolus	GO:0005730	Cellular Component	97%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	97%
Blast2go	chloroplast	GO:0009507	Cellular Component	97%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	97%
Blast2go	plasma membrane	GO:0005886	Cellular Component	97%
Blast2go	apoplast	GO:0048046	Cellular Component	97%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Chaperone DnaK	IPR012725	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRY5

Fln msg: Warning!, your query overlaps and the subject is separated, and overlapping frame ERROR between 282 and 276, Distance to subject end: 355 aas, your sequence is shorter than subject: 273 - 652

Fln protein: MAGKGEGPAIGIDLGTTYSCVGVWQHDRxxxxAKNQVAMNPTNTVFDAKRLIGRRFSDATVQSDIKMWPFELTPGPADKPMIVxxxxxEEKQFAAEEISSMVLMKMREIAEAYLGVTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKAGSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKFKKDIRGSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID

Protein Length: 274

Fln nts: ATATCTTCTGTAGAGTTTTGAA_-_ATGGCCGGCAAGGGAGAGGGCCCTGCGATCGGTATAGATCTCGGTACTACGTATTCCTGCGTTGGGGTGTGGCAGCATGACAGAxxxxxxxxxxxxGCAAAGAATCAGGTCGCCATGAATCCCACCAATACCGTTTTTGATGCCAAGAGATTGATTGGAAGGCGTTTCAGTGACGCTACTGTTCAGAGTGACATCAAGATGTGGCCTTTTGAGTTAACACCGGGGCCTGCTGACAAGCCTATGATTGTTGTxxxxxxxxxxxxCGAGGAGAAGCAGTTCGCTGCAGAGGAGATTTCATCCATGGTGTTAATGAAGATGAGGGAGATTGCAGAGGCTTACCTTGGTGTCACAATAAAGAATGCCGTTGTCACTGTTCCTGCATATTTCAACGACTCCCAGAGGCAGGCTACCAAGGATGCTGGAGTGATTGCTGGGTTGAATGTGATGAGAATAATCAATGAGCCTACTGCTGCTGCTATTGCCTATGGTTTGGACAAGAAGGCTGGCAGTGTGGGTGAGAAAAATGTATTGATCTTCGATTTGGGTGGTGGAACATTTGATGTTTCACTTTTGACTATTGAAGAGGGTATTTTTGAAGTGAAGTCTACAGCTGGTGACACCCATCTGGGTGGTGAAGATTTTGATAATAGGATGGTTAACCACTTTGTACAAGAATTTAAAAGGAAGTTCAAGAAGGATATTAGGGGTAGTGCTAGGGCTTTGAGAAGATTGAGGACCGCTTGTGAAAGGGCCAAGAGGACTCTTTCATCCACTGCTCAGACAACCATAGAGATTGATTCTTTGTATGAAGGCATCGAC

Fln Alignment:

biogeco2_mira_rep_c20572___KGEGPAIGIDLGTTYSCVGVWQHDRVEMxxxxxxxxxxxxxxxxxxxxxxxGDAAKNQVAMNPTNTVFDAKRLIGRRFSDATVQSDIKMWPFELTPGPADKPMIVVNxxGEEKQFAAEEISSMVLMKMREIAEAYLGVTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKAGSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKFKKDIRGSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID
B8LRY5__________________KGEGPAIGIDLGTTYSCVGVWQHDRVEIxxxxxxxxxxxxxxxxxxxxxxxGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPTVQNDMKLWPFKVISGPAEKPMIVVSxxGEDKQFAAEEISSMVLTKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFTQEFKRKYKKDLSSSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
543	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain