SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19380

Length: 249 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19380
TTCGCCAACTGTGGGAATTACGAGCCGTGGATGAGAGAAAGGTAAACGAGTCAATCGTGCCCAAGCTCACCAATGATCCGCAGAGGAATGCTATGATGCTACAACAAATGGGTCCAGATGATATGGTTGATGGAGCTTTGGATGAATCTCCTCGTTTTCACTAAAATCTGAATTTGTTGTTGGGTTGGACAACAATATCTGGAATTTGAAGAGAATTCTGCTCCACAGAGAGGTATCTGTTGTTGGTGT

Ace file of the UniGene biog2_v2.0_unigene19380 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29381	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=5 Tax=Pinaceae RepID=Q1L6F3_PINLA	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	cc-nbs-lrr protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	apoplast	GO:0048046	Cellular Component	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3		IPR014011	-	-
Sma3	Leucine-rich repeat-containing protein 40	IPR015766	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKC3

Fln msg: Separated hits, possible frame ERROR between 152 and 164, Distance to subject end: 626 aas, your sequence is shorter than subject: 82 - 835

Fln protein: RQLWELRAVDERKVNESIVPKLTNDPQRNAMMLQQMGPDDMVDGALDESxxxxxKSEFVVGLDNNIWNLKRILLHREVSVVG

Protein Length: 83

Fln nts: TTCGCCAACTGTGGGAATTACGAGCCGTGGATGAGAGAAAGGTAAACGAGTCAATCGTGCCCAAGCTCACCAATGATCCGCAGAGGAATGCTATGATGCTACAACAAATGGGTCCAGATGATATGGTTGATGGAGCTTTGGATGAATCTCCxxxxxxxxxxxxAAAATCTGAATTTGTTGTTGGGTTGGACAACAATATCTGGAATTTGAAGAGAATTCTGCTCCACAGAGAGGTATCTGTTGTTGGTGT

Fln Alignment:

biogeco2_mira_rep_c19926___RQLWELRAVDERKVNESIVPKLTNDPQRNAMMLQQMGPDDMVDGALDESPxxxxKSEFVVGLDNNIWNLKRILLHREVSVVG
B8LKC3__________________RQLCEKGSVDERKVNEAIVPKLTNDPQKNAVMLQQIGSDDMFDGVLDEAPxxxxKSDFVVGLEKNISNVKRILLDRDVSVVG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain