SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19373

Length: 255 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19373
CATTTCAGCCTCTGGGCCATGATGAAGGCACCATTGTTGATAGGGTGTGATGTGAGGTCTATGAGCTCTGGGACTGTGGAGATCCTTGGCAACGCAGAGGTGATTGCAGTCAATCAAGATCCATTGGGAGTACAAGGCAAGAAAGTCTACAGCAATGACAATCTGGAGGTATGGGCAGGTCCTTTATCCAACAATCGTATGGTGGTAATTCTATTGAATAGAAGAGAATCGAGAGCTTCAATTACAGCCAAATGG

Ace file of the UniGene biog2_v2.0_unigene19373 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24291	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	alpha-galactosidase 1 [Arabidopsis thaliana] emb\|CAC08338.1\| alpha-galactosidase-like protein [Arabidopsis thaliana] gb\|AED91292.1\| alpha-galactosidase 1 [Arabidopsis thaliana]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	alpha-galactosidase alpha-n-	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	78%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	78%
Blast2go	apoplast	GO:0048046	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, clan GH-D	IPR000111	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Glycoside hydrolase, family 27	IPR002241	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWJ8

Fln msg: Distance to subject end: 49 aas, your sequence is shorter than subject: 85 - 399

Fln protein: HFSLWAMMKAPLLIGCDVRSMSSGTVEILGNAEVIAVNQDPLGVQGKKVYSNDNLEVWAGPLSNNRMVVILLNRRESRASITAKW

Protein Length: 86

Fln nts: CATTTCAGCCTCTGGGCCATGATGAAGGCACCATTGTTGATAGGGTGTGATGTGAGGTCTATGAGCTCTGGGACTGTGGAGATCCTTGGCAACGCAGAGGTGATTGCAGTCAATCAAGATCCATTGGGAGTACAAGGCAAGAAAGTCTACAGCAATGACAATCTGGAGGTATGGGCAGGTCCTTTATCCAACAATCGTATGGTGGTAATTCTATTGAATAGAAGAGAATCGAGAGCTTCAATTACAGCCAAATGG

Fln Alignment:

biogeco2_mira_rep_c19908___HFSLWAMMKAPLLIGCDVRSMSSGTVEILGNAEVIAVNQDPLGVQGKKVYSNDNLEVWAGPLSNNRMVVILLNRRESRASITAKW
A9NWJ8__________________HFSIWALMKAPLLIGCDVTSMDKKTYGILSNSEVIAVNQDPLGVQGKKVNKLGDLEVWAGPLSNNRVAVVLLNRSNSRTIITAKW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain