SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene19294

Length: 444 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene19294
AAATATGTCATCCGACGAAGAGGAGCTCATTATTTTGATGCATCGGCTTCTTGGTAATAGATGGTCGCTGATAGCAGGGCGACTGCCTGGGCGGACCGACAACGAAATCAAGAACTACTGGAAAACTCATCTTAGCAAGACGCTGTCAGTCAACCAATCTCAAGGCAAAACCAGGCAAAATCTCGAACCAAGGTCGAAATCTCGTTGTATCCTACAAAACCACGTGATTAAAACACCCCCACTAGAGTAACAAGTGAGGTGAAACTCTACGCAATGGATCATGCTATCAAATTGCCTGGCACTACACAAATTATGAGTGTGTCCGCAATGGATCATGCTATCAAATTGCCTGGCACTACACAAATTATGAGTGTGCCCAAGTCAGGGTGCAACTTACCTGCAAACGAGTCAATCACCGAAGATAATGTAGCTGTTATGAATTCA

Ace file of the UniGene biog2_v2.0_unigene19294 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene70035	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[KAD] COG5147 Myb superfamily proteins, including transcription factors and mRNA splicing factors	-	-	6.0e-08	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	myb transcription factor	-	-	2.43508e-29	76%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMJ6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 176 aas, your sequence is shorter than subject: 83 - 392

Fln protein: NMSSDEEELIILMHRLLGNRWSLIAGRLPGRTDNEIKNYWKTHLSKTLSVNQSQGKTRQNLEPRSKSRCILQNHVIKTPPLE*

Protein Length: 84

Fln nts: AAATATGTCATCCGACGAAGAGGAGCTCATTATTTTGATGCATCGGCTTCTTGGTAATAGATGGTCGCTGATAGCAGGGCGACTGCCTGGGCGGACCGACAACGAAATCAAGAACTACTGGAAAACTCATCTTAGCAAGACGCTGTCAGTCAACCAATCTCAAGGCAAAACCAGGCAAAATCTCGAACCAAGGTCGAAATCTCGTTGTATCCTACAAAACCACGTGATTAAAACACCCCCACTAGAGTAACAAGTGAGGTGAAACTCTACGCAATGGATCATGCTATCAAATTGCCTGGCACTACACAAATTATGAGTGTGTCCGCAATGGATCATGCTATCAAATTGCCTGGCACTACACAAATTATGAGTGTGCCCAAGTCAGGGTGCAACTTACCTGCAAACGAGTCAATCACCGAAGATAATGTAGCTGTTATGAATTCA

Fln Alignment:

biogeco2_mira_rep_c19797___NMSSDEEELIILMHRLLGNRWSLIAGRLPGRTDNEIKNYWKTHLSKTLSVNQSQGKTRQNLEPRSKSRCILQNHVIKTPPLE*QVR
B8LMJ6__________________NICPDEEELIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLSLNESQHKTSQNLISSSKSPLPVQTRVFKASPFPVQTR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain