SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18934

Length: 461 nt

UniGene Fasta

>biog2_v2.0_unigene18934
AAACATGCGGGTGAAGTTACCGCATCTGATCAGGGCGGTGCGGAATGCGGGATTGATTGTTACGTGGGTTAGCGATCCAATGCACGGCAACACCATCAAGGCTCCTTGCGGTCTCAAGACTCGACCTTTTGACGCAATTCGGGCAGAAGTGCGAGCATTTTTTGATGTTCATGAGCAAGAAGGAAGCCATCCTGGAGGAGTGCATCTAGAGATGACTGGGCAGAATGTGACAGAGTGTGTAGGAGGGTCAGGGGGTGTCACCCTTGATGACTTAAGCTCTCGTTACCACACACATTGTGACCCTCGACTGAATGCTTCTCAATCTTTGGAGTTGGCCTTCATCATTGCAGAGAGGTTGAGGAAGAGGAGGCTCACATCTAAAGCAATTCCAAACTTTACCAACCAATATAAACTCACTTCCTCCCTCCATTAAAATAAACAATCAAACAAATACCTATCTA

Ace file of the UniGene biog2_v2.0_unigene18934

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15992	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase 02 n=4 Tax=Vitis vinifera RepID=D0VBC5_VITVI	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	2-dehydro-3-deoxyphosphoheptonate aldolase 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	carboxylic acid biosynthetic process	GO:0046394	Biological Process	0.0	89%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	DAHP synthetase, class II	IPR002480	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUF5

Fln msg: your sequence is shorter than subject: 144 - 535

Fln protein: NMRVKLPHLIRAVRNAGLIVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECVGGSGGVTLDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRLTSKAIPNFTNQYKLTSSLH*

Protein Length: 145

Fln nts: AAACATGCGGGTGAAGTTACCGCATCTGATCAGGGCGGTGCGGAATGCGGGATTGATTGTTACGTGGGTTAGCGATCCAATGCACGGCAACACCATCAAGGCTCCTTGCGGTCTCAAGACTCGACCTTTTGACGCAATTCGGGCAGAAGTGCGAGCATTTTTTGATGTTCATGAGCAAGAAGGAAGCCATCCTGGAGGAGTGCATCTAGAGATGACTGGGCAGAATGTGACAGAGTGTGTAGGAGGGTCAGGGGGTGTCACCCTTGATGACTTAAGCTCTCGTTACCACACACATTGTGACCCTCGACTGAATGCTTCTCAATCTTTGGAGTTGGCCTTCATCATTGCAGAGAGGTTGAGGAAGAGGAGGCTCACATCTAAAGCAATTCCAAACTTTACCAACCAATATAAACTCACTTCCTCCCTCCATTAA___AATAAACAATCAAACAAATACCTATCTA

Fln Alignment:

biogeco2_mira_rep_c19223___MRVKLPHLIRAVRNAGLIVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECVGGSGGVTLDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRLTS
A9NUF5__________________LRVKLPHLIRAVRNAGLIVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTLDDLSDRYHTHCDPRLNASQALELAFIIAERLRKRRLGS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
289		66		33	0.997461
290	66		33		0.997459
291		66	33		0.997459
292	66		33		0.997459
405	66		33		0.997476
418		66	33		0.997476

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain