SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18917

Length: 389 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene18917
TAAATCCCCTGAATTTCTTAAAATGAATCCTATAGGAAAGATTCCGGTTTTGGAGACACCTGAGGGTGCAGTTTTTGAAAGTAATGTCATTGCACGTTATGTTGCACGATTGAAGGGTGACAATACCCTGTTTGGATCTTCACTGATTGATTATGCCCATGTCGAACAGTGGATAGATTTTCTTCTATAGAGATTGATGCAAATGTCATGCGATGGTACTTTCCTAGAATTGGATCTGGACCGTACCTTCCACCGGCAGAGGAGGCTGCCATTTCTGACCTCAAGATAGGTTTACTTGCATTGAATTCATATCTGGCTACAAACACCTACCTGGTCGGGCATTCCATTACATTGGCAGACATTATTGTGACATGCAACTTGTATCAGGG

Ace file of the UniGene biog2_v2.0_unigene18917 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28027	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Elongation factor 1-gamma n=1 Tax=Prunus avium RepID=EF1G_PRUAV	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	elongation factor 1-gamma	-	-	83%

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3		IPR012335	-	-
Sma3	Translation elongation factor EF1B, gamma chain, conserved	IPR001662	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWP6

Fln msg: Overlapping hits, possible frame ERROR between 181 and 178, Distance to subject end: 254 aas, your sequence is shorter than subject: 129 - 424

Fln protein: KSPEFLKMNPIGKIPVLETPEGAVFESNVIARYVARLKGDNTLFGSSLIDYAHVEQWIxxxSIEIDANVMRWYFPRIGSGPYLPPAEEAAISDLKIGLLALNSYLATNTYLVGHSITLADIIVTCNLYQ

Protein Length: 130

Fln nts: TAAATCCCCTGAATTTCTTAAAATGAATCCTATAGGAAAGATTCCGGTTTTGGAGACACCTGAGGGTGCAGTTTTTGAAAGTAATGTCATTGCACGTTATGTTGCACGATTGAAGGGTGACAATACCCTGTTTGGATCTTCACTGATTGATTATGCCCATGTCGAACAGTGGATAxxxxxxxxxTCTATAGAGATTGATGCAAATGTCATGCGATGGTACTTTCCTAGAATTGGATCTGGACCGTACCTTCCACCGGCAGAGGAGGCTGCCATTTCTGACCTCAAGATAGGTTTACTTGCATTGAATTCATATCTGGCTACAAACACCTACCTGGTCGGGCATTCCATTACATTGGCAGACATTATTGTGACATGCAACTTGTATCAGGG

Fln Alignment:

biogeco2_mira_rep_c19192___KSPEFLKMNPIGKIPVLETPEGAVFESNVIARYVARLKGDNTLFGSSLIDYAHVEQWIDxSSIEIDANVMRWYFPRIGSGPYLPPAEEAAISDLKIGLLALNSYLATNTYLVGHSITLADIIVTCNLY
A9NWP6__________________KSQKFLSMNPIGKVPVLETPEGAVFESNAIARYVARLKDDNSLFGSSLIDYGHVEQWIDxSSLEIDINIMRWYFPRMGHGLYLPPAEEATIAGLKRGLAALNSHLATNTYLVGHSITLADIIMTCNLY

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
180	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain