SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18907

Length: 470 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene18907
CCGTAACTCATCTGAAACCCTGCTAAGCAAAATGAGAATATTGAATTTTATGGGCAATTCCTTTGGATGTTCTGCTTCTGGAGAACGACTAGTTTCTGCTGCTAGAGACGGAGATTTGCAAGAAGCTAAGGCTTTATTGGAATGCAACCCTCGTCTTGCAAAGTATTCGACCTTTGGTGTTCGAAATTCTCCTTTGCATTATTCAGCAGCTCAAGGACACAATGAGATTGTCTCTCTTTTGCTTGAATCTGGGGTTGATGTGAATATCCGCAACTATTGTGGTCAGACAGCCTTGATGCAAGCTTGTAGATATGGTCACTGGGAGGTGGTTCAGACACTTGTGTTATATAAGGCAAATGTCAACAGAGCAGACTATCTTAATGGTCGAACTGCTCTTCATTTTGCAGCCGTAAATGGCCATTCTCGATGTGTGAGACTTCTTTTTGCTGATGCTGTACCCAGTGTACCTG

Ace file of the UniGene biog2_v2.0_unigene18907 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6465	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	ankyrin repeat-rich protein [Solanum tuberosum]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	27%
Blast2go	ankyrin repeat-rich protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	signal peptide processing	GO:0006465	Biological Process	76%
Blast2go	peptidase activity	GO:0008233	Molecular Function	76%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	76%
Blast2go	integral to membrane	GO:0016021	Cellular Component	76%
Blast2go	mitochondrion	GO:0005739	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Acetohydroxy acid isomeroreductase C-terminal	IPR000506	-	-
Sma3	Peptidase M16, zinc-binding site	IPR001431	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Peptidase M16, C-terminal	IPR007863	-	-
Sma3	Peptidase M16, core	IPR011237	-	-
Sma3	Peptidase M16, N-terminal	IPR011765	-	-
Sma3	Acetohydroxy acid isomeroreductase	IPR013023	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NN39

Fln msg: Distance to subject end: 30 aas, your sequence is shorter than subject: 156 - 247

Fln protein: RNSSETLLSKMRILNFMGNSFGCSASGERLVSAARDGDLQEAKALLECNPRLAKYSTFGVRNSPLHYSAAQGHNEIVSLLLESGVDVNIRNYCGQTALMQACRYGHWEVVQTLVLYKANVNRADYLNGRTALHFAAVNGHSRCVRLLFADAVPSVP

Protein Length: 157

Fln nts: CCGTAACTCATCTGAAACCCTGCTAAGCAAAATGAGAATATTGAATTTTATGGGCAATTCCTTTGGATGTTCTGCTTCTGGAGAACGACTAGTTTCTGCTGCTAGAGACGGAGATTTGCAAGAAGCTAAGGCTTTATTGGAATGCAACCCTCGTCTTGCAAAGTATTCGACCTTTGGTGTTCGAAATTCTCCTTTGCATTATTCAGCAGCTCAAGGACACAATGAGATTGTCTCTCTTTTGCTTGAATCTGGGGTTGATGTGAATATCCGCAACTATTGTGGTCAGACAGCCTTGATGCAAGCTTGTAGATATGGTCACTGGGAGGTGGTTCAGACACTTGTGTTATATAAGGCAAATGTCAACAGAGCAGACTATCTTAATGGTCGAACTGCTCTTCATTTTGCAGCCGTAAATGGCCATTCTCGATGTGTGAGACTTCTTTTTGCTGATGCTGTACCCAGTGTACCTG

Fln Alignment:

biogeco2_mira_c19177___LVSAARDGDLQEAKALLECNPRLAKYSTFGVRNSPLHYSAAQGHNEIVSLLLESGVDVNIRNYCGQTALMQACRYGHWEVVQTLVLYKANVNRADYLNGRTALHFAAVNGHSRCVRLL
A9NN39__________________LHSAVSSGHANVVEALLQAGADVSVANNGG--RTALHYAASKGRVKIAQDLISNGANIRKKDKFGCTPLHRAASAGHPEICELLIEEGADVDATD-KTGQTPLMNAVISNDKQIALLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain