SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18905

Length: 540 nt

UniGene Fasta

>biog2_v2.0_unigene18905
CCACACCAAATGCCAAAACTTTTTCCTGGAAGTCCATGTTGAAGTGAGTAATGTTGGCCGAAGAGGGGGTGGCCATGTCTTGTTTTATTCTCCTCACCCCCATCCAAGCACCATGCCCCAAAGAAGCAATTGCTCGGATTCAGAAAGCTCCATCTCCAAGCAGGAGCCATGGAAAAAGTCCATTTCACTCTTAATGTATGCAAGGATCTCAGCATTGTTGATAAGACTGGCACCAGGAAGTTGCCAGTGGGTTCTCATCTTCTTCATATTGGTGATCTCCAACACTCTGTTTCTCTACAAATAAGCAGTTGATTCCCACTCAATGGAAATCTGGCTGTATGCTTCCCCAAGGAGCAGCGGGGCAGCTCTGATAATTTTTCCCTCATAACTGGAATAAATTATTGTTTACTGTGTCCCCATATCAGAAATTGTTGTCAACAACTGCAGGCAGTCTCTTTTATATTGCCAGTAGTACTATAGATTCATGATGTTTCTTTTTGCTAAGAGGCTCTGAATTGATCATAATAGCCTCTTTGGCTC

Ace file of the UniGene biog2_v2.0_unigene18905

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene956	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	[G] COG1472 Beta-glucosidase-related glycosidases	-	-	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	beta-xylosidase alpha-l-arabinofuranosidase 2-like	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	0.0	78%

Source	KEGGs	Term	Type	Identity
Blast2go	Starch and sucrose metabolism	00500		78%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		78%
Blast2go	Metabolic pathways	01100		78%
Blast2go	Alpha-N-arabinofuranosidase.	EC:3.2.1.55	-	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	78%
Blast2go	Beta-glucosidase.	EC:3.2.1.21	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Cyanoamino acid metabolism	00460	78%
Blast2go	Starch and sucrose metabolism	00500	78%
Blast2go	Phenylpropanoid biosynthesis	00940	78%
Blast2go	Biosynthesis of secondary metabolites	01110	78%

Source	GOs	Term	Type	Identity
Blast2go	xylan catabolic process	GO:0045493	Biological Process	78%
Blast2go	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	78%
Blast2go	alpha-N-arabinofuranosidase activity	GO:0046556	Molecular Function	78%
Blast2go	beta-glucosidase activity	GO:0008422	Molecular Function	78%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	78%
Blast2go	cell wall	GO:0005618	Cellular Component	78%
Blast2go	proteinaceous extracellular matrix	GO:0005578	Cellular Component	78%
Blast2go	apoplast	GO:0048046	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Parathyroid hormone/parathyroid hormone-related protein	IPR001415	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABI5

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 104 - 304

Fln protein: PHQMPKLFPGSPC*SE*CWPKRGWPCLVLFSSPPSKHHAPKKQLLGFRKLHLQAGAMEKVHFTLNVCKDLSIVDKTGTRKLPVGSHLLHIGDLQHSVSLQISS*

Protein Length: 105

Fln nts: CCACACCAAATGCCAAAACTTTTTCCTGGAAGTCCATGTTGAAGTGAGTAATGTTGGCCGAAGAGGGGGTGGCCATGTCTTGTTTTATTCTCCTCACCCCCATCCAAGCACCATGCCCCAAAGAAGCAATTGCTCGGATTCAGAAAGCTCCATCTCCAAGCAGGAGCCATGGAAAAAGTCCATTTCACTCTTAATGTATGCAAGGATCTCAGCATTGTTGATAAGACTGGCACCAGGAAGTTGCCAGTGGGTTCTCATCTTCTTCATATTGGTGATCTCCAACACTCTGTTTCTCTACAAATAAGCAGTTGA___TTCCCACTCAATGGAAATCTGGCTGTATGCTTCCCCAAGGAGCAGCGGGGCAGCTCTGATAATTTTTCCCTCATAACTGGAATAAATTATTGTTTACTGTGTCCCCATATCAGAAATTGTTGTCAACAACTGCAGGCAGTCTCTTTTATATTGCCAGTAGTACTATAGATTCATGATGTTTCTTTTTGCTAAGAGGCTCTGAATTGATCATAATAGCCTCTTTGGCTC

Fln Alignment:

biogeco2_mira_rep_c19174___GWPCLVLFSSPPSKHH-APKKQLLGFRKLHLQAGAMEKVHFTLNVCKDLSIVDKTGTRKLPVGSHLLHIGDLQHSVSL
D5ABI5__________________GRHAVLLYSKSPATHKGAPQKQLIGFRSVHVQGKHTAKVTFVVKPCDHFSTVEENGQRLLAIGSHSLIVGDTQYPVSL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
251	25		75		0.996486
361	33		66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain