SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18758

Length: 507 nt

UniGene Fasta

>biog2_v2.0_unigene18758
AAGTTAAGAGTGGAAGATGCCTTGAATGCAACAAAGGCAGCTGTTGAGGAAGGCATTGTTGTTGGTGGCGGGTGTAGTCTCTTGAGACTTGCTTCAAAGGTTGATGCAATAAGAGATACACTTGAAAATGATGAGCAAAAGATTGGTGCAGGCATTGTTAAACGGGCTTTGAGCTACCCATTGAAATTGATTGCGAAGAATGCTGGAGTGAATGGAAGTGTTGTGGCTGAAAAGGTTCTTTCCAGTGATAATCCCAAATATGGTTACAATGCTGCTACGGGCAAATATGAAGATTTGATGGCTGCTGGAATAATTGATCCAACTAAGGTGGTTAGGTGTTGCTTGGAGCATGCGGCATCTGTGGCAAAGACCTTCCTGACATCAGATGTAGTTGTCGTTGACATCAAGGAGCCAGAACCTGCTCCTTCTCCGAACCCCATGGATAACTCAGGTTATGGGTACTAGATGCAAATATGGCCAATAATCCGAAGAAAATAATCTTCTTAT

Ace file of the UniGene biog2_v2.0_unigene18758

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17232	4/8
SustainPine v2.0	sp_v2.0_unigene21969	4/8

Source	Descriptions	Term	Type	Identity
AutoFact	TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana] dbj\|BAB01754.1\| GloEL protein; chaperonin, 60 kDa [Arabidopsis thaliana] gb\|AEE75362.1\| TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana]	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	isco large subunit-binding protein subunit beta	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	cell death	GO:0008219	Biological Process	91%
Blast2go	chaperone mediated protein folding requiring cofactor	GO:0051085	Biological Process	91%
Blast2go	response to cold	GO:0009409	Biological Process	91%
Blast2go	systemic acquired resistance	GO:0009627	Biological Process	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	mitochondrion	GO:0005739	Cellular Component	91%
Blast2go	nucleolus	GO:0005730	Cellular Component	91%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	91%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	91%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	91%
Blast2go	stromule	GO:0010319	Cellular Component	91%
Blast2go	apoplast	GO:0048046	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Chaperonin Cpn60	IPR001844	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV22

Fln msg: your sequence is shorter than subject: 155 - 617

Fln protein: KLRVEDALNATKAAVEEGIVVGGGCSLLRLASKVDAIRDTLENDEQKIGAGIVKRALSYPLKLIAKNAGVNGSVVAEKVLSSDNPKYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVDIKEPEPAPSPNPMDNSGYGY*

Protein Length: 156

Fln nts: AAGTTAAGAGTGGAAGATGCCTTGAATGCAACAAAGGCAGCTGTTGAGGAAGGCATTGTTGTTGGTGGCGGGTGTAGTCTCTTGAGACTTGCTTCAAAGGTTGATGCAATAAGAGATACACTTGAAAATGATGAGCAAAAGATTGGTGCAGGCATTGTTAAACGGGCTTTGAGCTACCCATTGAAATTGATTGCGAAGAATGCTGGAGTGAATGGAAGTGTTGTGGCTGAAAAGGTTCTTTCCAGTGATAATCCCAAATATGGTTACAATGCTGCTACGGGCAAATATGAAGATTTGATGGCTGCTGGAATAATTGATCCAACTAAGGTGGTTAGGTGTTGCTTGGAGCATGCGGCATCTGTGGCAAAGACCTTCCTGACATCAGATGTAGTTGTCGTTGACATCAAGGAGCCAGAACCTGCTCCTTCTCCGAACCCCATGGATAACTCAGGTTATGGGTACTAG___ATGCAAATATGGCCAATAATCCGAAGAAAATAATCTTCTTAT

Fln Alignment:

biogeco2_mira_rep_c18829___KLRVEDALNATKAAXXXXXXXXXXCSLLRLASKVDAIRDTLENDEQKIGAGIVKRALSYPLKLIAKNAGVNGSVVAEKVLSSDNPKYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVDIKEPEPAPSPNPMDNSGYGY
A9NV22__________________KLRVEDALNATKAAVEEGIVVGGGCALLRLASKVDAIRDTLENDEQKVGAGIVKRALSYPLKLIAKNAGVNGSVVVEKVLSSDDPKYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVDIKEPEPAASPNPMDNSGYGY

SNPs (tot: 3)

Position	A %	C %	T %	Probability
335		14	85	0.993533
346	14		85	0.993533
401		50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain