SustainPineDB

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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18657

Length: 428 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene18657
ATGGGGATCTTATCTGTGAGGAGGTTCGAGGGTGGGGTGTGTTAGATTGACTGGGAAGGAGGGCACCATCATCTGGTTAACAGAAATCAGTGTCATTAGATCGCATCAGAGGCTACCATGCCTTTCAGGCGTTTTATCGAGATTGGACGTGTAGCTCTCATTAACTATGGTCCCGACTATGGAAAGCTTGTCGTGATTGCCGATGTTGTCGACCAGAACCGCGCCTTGGTTGATGCACCTAAGATGGTGAGATGCCAAATGAACTTTAAGAGGCTCTCACTAACTGATATCAAAATTGATATTCCTAGAGTACCAAAGAAGAAAGTTTTGATCGAGGCCATGGAAGCTGCAGAAGTTCAAAAGAGGTGGGATAATAGTTCATGGGGTCGGAAATTGATTGTGCAAAAACGAAGAGCTGAATTGAATGA

Ace file of the UniGene biog2_v2.0_unigene18657 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25066	2/7
SustainPine v2.0	sp_v2.0_unigene49087	5/7

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[J] COG2163 Ribosomal protein L14E/L6E/L27E	-	-	1.0e-19	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	60s ribosomal protein	-	-	0.0	93%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ00

Fln msg: Distance to subject end: 30 aas, your sequence is shorter than subject: 103 - 134

Fln protein: MPFRRFIEIGRVALINYGPDYGKLVVIADVVDQNRALVDAPKMVRCQMNFKRLSLTDIKIDIPRVPKKKVLIEAMEAAEVQKRWDNSSWGRKLIVQKRRAELN

Protein Length: 104

Fln nts: ATGGGGATCTTATCTGTGAGGAGGTTCGAGGGTGGGGTGTGTTAGATTGACTGGGAAGGAGGGCACCATCATCTGGTTAACAGAAATCAGTGTCATTAGATCGCATCAGAGGCTACC_-_ATGCCTTTCAGGCGTTTTATCGAGATTGGACGTGTAGCTCTCATTAACTATGGTCCCGACTATGGAAAGCTTGTCGTGATTGCCGATGTTGTCGACCAGAACCGCGCCTTGGTTGATGCACCTAAGATGGTGAGATGCCAAATGAACTTTAAGAGGCTCTCACTAACTGATATCAAAATTGATATTCCTAGAGTACCAAAGAAGAAAGTTTTGATCGAGGCCATGGAAGCTGCAGAAGTTCAAAAGAGGTGGGATAATAGTTCATGGGGTCGGAAATTGATTGTGCAAAAACGAAGAGCTGAATTGAATGA

Fln Alignment:

biogeco2_mira_rep_c18397___MPFRRFIEIGRVALINYGPDYGKLVVIADVVDQNRALVDAPKMVRCQMNFKRLSLTDIKIDIPRVPKKKVLIEAMEAAEVQKRWDNSSWGRKLIVQKRRAELN
C0PQ00__________________MPFSRFIEIGRVALINYGPDYGKLVVIVDVVDQNRALVDSPKMVRCQMNFKRLSLTDIKIDIPRVPKKKVLIEAMEAAEVQKRWDNSSWGRKLIVQKRRAELN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain