SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18458

Length: 257 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene18458
CCAANGGTTTCAAAGTTGCATCTGAAGCCTCTTCGACGCTCACGAGAGGGGCTAGTTCTTTCTCTGCTGGTGGCGCTGGTAAAGGAATGCACTTTCGATTATATCTACGGGTTTTGAATGAATACCGACAAGTGCAAACATTTTCTGCTTTCAACAGTGTGTACAATGATAATGGCCTTTTTGGCATTCATGCAACTGCGGAGATTTCAACTTCAAGGGAACGACATGTAGAAGCATCATCTGAGACAAATATACAA

Ace file of the UniGene biog2_v2.0_unigene18458 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26361	1/2
SustainPine v2.0	sp_v2.0_unigene62478	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os01g0739000 protein n=3 Tax=Oryza sativa RepID=Q5JNL6_ORYSJ	-	-	9.0e-09	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	mitochondrial-processing peptidase subunit alpha-like	-	-	0.0	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	85%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L22/L17	IPR001063	-	-
Sma3	Peptidase M16, zinc-binding site	IPR001431	-	-
Sma3	Ribosomal protein L22, bacterial-type	IPR005727	-	-
Sma3	Peptidase M16, C-terminal	IPR007863	-	-
Sma3	Peptidase M16, core	IPR011237	-	-
Sma3	Peptidase M16, N-terminal	IPR011765	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXV7

Fln msg: Distance to subject end: 189 aas, your sequence is shorter than subject: 85 - 361

Fln protein: NGFKVASEASSTLTRGASSFSAGGAGKGMHFRLYLRVLNEYRQVQTFSAFNSVYNDNGLFGIHATAEISTSRERHVEASSETNIQ

Protein Length: 86

Fln nts: CCAAtGGTTTCAAAGTTGCATCTGAAGCCTCTTCGACGCTCACGAGAGGGGCTAGTTCTTTCTCTGCTGGTGGCGCTGGTAAAGGAATGCACTTTCGATTATATCTACGGGTTTTGAATGAATACCGACAAGTGCAAACATTTTCTGCTTTCAACAGTGTGTACAATGATAATGGCCTTTTTGGCATTCATGCAACTGCGGAGATTTCAACTTCAAGGGAACGACATGTAGAAGCATCATCTGAGACAAATATACAA

Fln Alignment:

biogeco2_mira_c17465___NGFKVASEASSTLTRXXXXXXXXXXXXGMHFRLYLRVLNEYRQVQTFSAFNSVYNDNGLFGIHATAEISTSRERHVEASSETNIQ
A9NXV7__________________NGLKVASEASATLMGGAGSFSAGGTGKGMYYRLYLRVLNEYRQVQSFSAFNSMYNDNGRFGNHATAGISTSRERHVEASSETNIQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain