SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18324

Length: 547 nt

UniGene Fasta

>biog2_v2.0_unigene18324
ATGTGATACTTGTAATCATTCTTTTTATTGGATGATGATTTAAGCATCCCATTCTCTGCGGACGATATATCAAACAATATTGGCGATATAGATATCTCTGACGTTGAGTTACCACCCTTGCTTCATGAATTCCCAGCTTTTCGTCTTTTGCTAGGGCATTGAAAATTGATGTGATAGGCTTTGGAGTTAATCTAATGCTTTTCTACAGCCTATGCAAAGGAAGACATAATTTTATTGTAAAGTCTTCTGAACCAAGAATTGTTGCCCCTGTTTCGATCATGAAGTTCAAGCACATCTTCTGTAGCTTTCATGGCAACAGTCCAGATAGTCAGCATGTATTATAATAGGACCACAACAGCTGGGCACATCGAGTAGAGATGTTCCCTTTGAAGATTTATATGCTCCTTTGGGATGCCGCGGGATTCAAAATCCATTTTACAAGGCAAAACCATGGTATTCACTTCTAACTATTGTTCTATCTTGCAGCTCAGAATTTTATTTGCACAAGTGAAGCTCATATTGCAGATTGGGAATCCAGAATGGCGAT

Ace file of the UniGene biog2_v2.0_unigene18324

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4624	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Myosin class 11-2 n=1 Tax=Adiantum capillus-veneris RepID=Q5NTX0_ADICA	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	protein	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	root hair cell tip growth	GO:0048768	Biological Process	63%
Blast2go	peroxisome localization	GO:0060151	Biological Process	63%
Blast2go	fruit development	GO:0010154	Biological Process	63%
Blast2go	cell division	GO:0051301	Biological Process	63%
Blast2go	post-embryonic development	GO:0009791	Biological Process	63%
Blast2go	mitochondrion localization	GO:0051646	Biological Process	63%
Blast2go	trichome branching	GO:0010091	Biological Process	63%
Blast2go	Golgi localization	GO:0051645	Biological Process	63%
Blast2go	actin filament-based movement	GO:0030048	Biological Process	63%
Blast2go	binding	GO:0005488	Molecular Function	63%
Blast2go	motor activity	GO:0003774	Molecular Function	63%
Blast2go	myosin complex	GO:0016459	Cellular Component	63%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	Involucrin repeat	IPR000354	-	-
Sma3	DNA topoisomerase, type IA	IPR000380	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA topoisomerase, type IA, domain 2	IPR003601	-	-
Sma3	HAMP linker domain	IPR003660	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3		IPR006154	-	-
Sma3	Toprim domain	IPR006171	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	DNA topoisomerase, type IA, central	IPR013497	-	-
Sma3	DNA topoisomerase, type IA, central region, subdomain 3	IPR013826	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADT7

Fln msg: Distance to subject end: 54 aas, your sequence is shorter than subject: 56 - 111

Fln protein: MFPLKIYMLLWDAAGFKIHFTRQNHGIHF*LLFYLAAQNFICTSEAHIADWESRMA

Protein Length: 57

Fln nts: ATGTGATACTTGTAATCATTCTTTTTATTGGATGATGATTTAAGCATCCCATTCTCTGCGGACGATATATCAAACAATATTGGCGATATAGATATCTCTGACGTTGAGTTACCACCCTTGCTTCATGAATTCCCAGCTTTTCGTCTTTTGCTAGGGCATTGAAAATTGATGTGATAGGCTTTGGAGTTAATCTAATGCTTTTCTACAGCCTATGCAAAGGAAGACATAATTTTATTGTAAAGTCTTCTGAACCAAGAATTGTTGCCCCTGTTTCGATCATGAAGTTCAAGCACATCTTCTGTAGCTTTCATGGCAACAGTCCAGATAGTCAGCATGTATTATAATAGGACCACAACAGCTGGGCACATCGAGTAGAG_-_ATGTTCCCTTTGAAGATTTATATGCTCCTTTGGGATGCCGCGGGATTCAAAATCCATTTTACAAGGCAAAACCATGGTATTCACTTCTAACTATTGTTCTATCTTGCAGCTCAGAATTTTATTTGCACAAGTGAAGCTCATATTGCAGATTGGGAATCCAGAATGGCGAT

Fln Alignment:

biogeco2_mira_c17307___MFPLKIYMLLWDAAGFKIHFTRQNHGIHF*LLFYLAAQNFICTSEAHIADWESRMA
D5ADT7__________________MFSLKLYMLLWDAAGSKFQCTRQKHGIQFKLLFYLAVQNFACTTEAHIADWESRMA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain