SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18261

Length: 366 nt

UniGene Fasta

>biog2_v2.0_unigene18261
TGTCTCAAGGTCATGGGCACCAGCTGAGGAGCGGAAATTCAGGGCACTTGTTCGACTCAATCCTGTGTCACTGGGAAAGAACTTTTGGAAACTTCTACCAGCATGCTTTCCTTCTAAATGTATGAAAATGTTGGTCAGTTACTACTTCAATGTCTTTGTTTGAGGCGGAGAAGTATTCAGAATAGGGCAATGCCAGAACAGATTGACAGTGATGATGATGAATCTGAGTTTGGTTTTATTTGAAAACTTCAATATGCATGGGATGGTACCCTCTGGAATGAGAAATGTTGAGAGGTTGTCAAGCAGAAGCTATTTAGGTCAATCTTCCAGCGCTTTAGTTTGTCACCAAAACATGCAGGATGATGA

Ace file of the UniGene biog2_v2.0_unigene18261

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4458	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain	-	-	2.0e-05	16%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	58%
Blast2go	dna binding	-	-	0.0	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	61%

Source	InterPros	Term	Type	Identity
Sma3	ELM2 domain	IPR000949	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	ARID/BRIGHT DNA-binding domain	IPR001606	-	-
Sma3		IPR014778	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9IK58

Fln msg: Separated hits, possible frame ERROR between 160 and 178, Unexpected STOP codon at 3' end. Distance to subject end: 92 aas, your sequence is shorter than subject: 81 - 445

Fln protein: VSRSWAPAEERKFRALVRLNPVSLGKNFWKLLPACFPSKCMKMLVSYYFNVFxxxxxxxQNRAMPEQIDSDDDESEFGFI*

Protein Length: 82

Fln nts: TGTCTCAAGGTCATGGGCACCAGCTGAGGAGCGGAAATTCAGGGCACTTGTTCGACTCAATCCTGTGTCACTGGGAAAGAACTTTTGGAAACTTCTACCAGCATGCTTTCCTTCTAAATGTATGAAAATGTTGGTCAGTTACTACTTCAATGTCTTTGTxxxxxxxxxxxxxxxxxxTCAGAATAGGGCAATGCCAGAACAGATTGACAGTGATGATGATGAATCTGAGTTTGGTTTTATTTGAAAACTTCAATATGCATGGGATGGTACCCTCTGGAATGAGAAATGTTGAGAGGTTGTCAAGCAGAAGCTATTTAGGTCAATCTTCCAGCGCTTTAGTTTGTCACCAAAACATGCAGGATGATGA

Fln Alignment:

biogeco2_mira_c17230___VSRSWAPAEERKFRALVRLNPVSLGKNFWKLLPACFPSKCMKMLVSYYFNVFVxxxxxxQNRAMPEQIDSDDDE
B9IK58__________________VANKWTDEEEQAFHEVVLSNPVSLGKNFWDHLSATFPSRTKKELVSYYFNVFMxxxxxxQNRFDPLNIDSDDDE

SSRs (tot: 1)

Start position	End position	Sequence	Length
210	221	TGA TGA TGA TGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain