SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18247

Length: 508 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene18247
GTGGCACAGAGCAAAATGCAGAACAAGACGCTGAAGACACATAGAGAGCAGAATTCGGGCCGACACGAAGATAATGGGCAAGTGGACGAAGACGCATTATTCACTATTTGTCCAATAGTGTTTACGATGGAAGCACTGGTAGCTGCTACTAAGAATTTTGACATTGATAACAAGATTGGAGAGGGAGGATTTGGACCTGTATACAAGGGAACTACCCAAGACGGAAAACAGATAGCTGTGAAGAAGCTGTCGTCAAAATCTAGGCAAGGAAGGAAGGAATTTATGAATGAAAAGCTGCTTGCAAAAATTCAGCATCGGAATGTAGTGAATCTACTCGGCTGCTGTGCACATGGATCAGAAAAGTTCCTTGTTTACGAGTACTTACCGAATAAGAGCCTTGATACATGGCTATCCGATCCGGAGAAACGCAAAGAACTTGATTGGAAGAAGCGGTACAACATCATCCTGGGAGTAGCTCGTGGGCTATCCTATATTCACGAGGATTCTC

Ace file of the UniGene biog2_v2.0_unigene18247 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28881	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor protein kinase, putative [Solanum bulbocastanum]	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	protein	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR012335	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLN9

Fln msg: Distance to subject end: 93 aas, your sequence is shorter than subject: 169 - 565

Fln protein: VAQSKMQNKTLKTHREQNSGRHEDNGQVDEDALFTICPIVFTMEALVAATKNFDIDNKIGEGGFGPVYKGTTQDGKQIAVKKLSSKSRQGRKEFMNEKLLAKIQHRNVVNLLGCCAHGSEKFLVYEYLPNKSLDTWLSDPEKRKELDWKKRYNIILGVARGLSYIHEDS

Protein Length: 170

Fln nts: GTGGCACAGAGCAAAATGCAGAACAAGACGCTGAAGACACATAGAGAGCAGAATTCGGGCCGACACGAAGATAATGGGCAAGTGGACGAAGACGCATTATTCACTATTTGTCCAATAGTGTTTACGATGGAAGCACTGGTAGCTGCTACTAAGAATTTTGACATTGATAACAAGATTGGAGAGGGAGGATTTGGACCTGTATACAAGGGAACTACCCAAGACGGAAAACAGATAGCTGTGAAGAAGCTGTCGTCAAAATCTAGGCAAGGAAGGAAGGAATTTATGAATGAAAAGCTGCTTGCAAAAATTCAGCATCGGAATGTAGTGAATCTACTCGGCTGCTGTGCACATGGATCAGAAAAGTTCCTTGTTTACGAGTACTTACCGAATAAGAGCCTTGATACATGGCTATCCGATCCGGAGAAACGCAAAGAACTTGATTGGAAGAAGCGGTACAACATCATCCTGGGAGTAGCTCGTGGGCTATCCTATATTCACGAGGATTCTC

Fln Alignment:

biogeco2_mira_c17214___VFTMEALVAATKNFDIDNKIGEGGFGPVYKGTTQDGKQIAVKKLSSKSRQGRKEFMNE-KLLAKIQHRNVVNLLGCCAHGSEKFLVYEYLPNKSLDTWLSDPEKRKELDWKKRYNIILGVARGLSYIHEDS
B8LLN9__________________VFEMETLVAATENFHDNNKIGEGGFGAVYKGITPEGNEIVVKRPSLNSRHATEVYLNEANLVPKIQHRNLVKLLGCCQEGPERLLVYEYLPNNSLDKILFDSNKRRQLDWQKRYSIILGITRGLLYLHEDS

SSRs (tot: 1)

Start position	End position	Sequence	Length
230	243	TTCC TTCC TTCC TT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain