SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18111

Length: 447 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene18111
GCCTTGTCTTGATAAGGAATACTTGAAGAAACCAGAGGATTATTTGTCTCATCTCATTGGTCATGAGGGTGGTGGTAGTTTGTTATCTCTTCTTAAAGAGAAAGGTTGGGCTACATCGTTATCAGCAGGGGTTGGTCATGGAGGATTGGACCGCTGTTCTGCAGGATACATGTTTGTTGTGAGCATAGATCTTACTGTTTCAGGGCTAGAAAAGGTTTTGGAGGTAATTGGGTATCTGTATCAGTATGTGAAGTTTATGCGTGACATGGCTCCACAAGAATGGGTATTTAAGGAGCTTCAAGATATTGGAAACCTAGAATTTAGATTTTCAGAAGAGCAGCCCCAAGATGATTATGCGGCAGAACTTGCAGCAAATTTGTTGGTATACCCTGAAGAGCATATCATCTATGGAGATTATGCATTTGAAATATGGGATCCTAAATTAGT

Ace file of the UniGene biog2_v2.0_unigene18111 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20469	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Metalloendopeptidase n=4 Tax=Arabidopsis RepID=D7KG76_ARALL	-	-	63%
FL-Next	sp=Zinc-metallopeptidase, peroxisomal; Arabidopsis thaliana (Mouse-ear cress).	-	-	35%
Blast2go	insulin-degrading enzyme-like	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 32	IPR001362	-	-
Sma3	Peptidase M16, zinc-binding site	IPR001431	-	-
Sma3	Peptidase M16, C-terminal	IPR007863	-	-
Sma3	Peptidase M16, core	IPR011237	-	-
Sma3	Peptidase M16, N-terminal	IPR011765	-	-
Sma3	Glycosyl hydrolases family 32, N-terminal	IPR013148	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O22941

Fln msg: Distance to subject end: 545 aas, your sequence is shorter than subject: 148 - 970

Fln protein: PCLDKEYLKKPEDYLSHLIGHEGGGSLLSLLKEKGWATSLSAGVGHGGLDRCSAGYMFVVSIDLTVSGLEKVLEVIGYLYQYVKFMRDMAPQEWVFKELQDIGNLEFRFSEEQPQDDYAAELAANLLVYPEEHIIYGDYAFEIWDPKL

Protein Length: 149

Fln nts: GCCTTGTCTTGATAAGGAATACTTGAAGAAACCAGAGGATTATTTGTCTCATCTCATTGGTCATGAGGGTGGTGGTAGTTTGTTATCTCTTCTTAAAGAGAAAGGTTGGGCTACATCGTTATCAGCAGGGGTTGGTCATGGAGGATTGGACCGCTGTTCTGCAGGATACATGTTTGTTGTGAGCATAGATCTTACTGTTTCAGGGCTAGAAAAGGTTTTGGAGGTAATTGGGTATCTGTATCAGTATGTGAAGTTTATGCGTGACATGGCTCCACAAGAATGGGTATTTAAGGAGCTTCAAGATATTGGAAACCTAGAATTTAGATTTTCAGAAGAGCAGCCCCAAGATGATTATGCGGCAGAACTTGCAGCAAATTTGTTGGTATACCCTGAAGAGCATATCATCTATGGAGATTATGCATTTGAAATATGGGATCCTAAATTAGT

Fln Alignment:

biogeco2_mira_c17048___WATSLSAGVGHGGLDRCSAGYMFVVSIDLTVSGLEKVLEVIGYLYQYVKFMRDMAPQEWVFKELQDIGNLEFRFSEEQPQDDYAAELAANLLVYPEEHIIYG
O22941__________________WATGLSAGEGEWTLDYS----FFKVSIDLTDAGHEHMQEILGLLFNYIQLLQQTGVCQWIFDELSAICETKFHYQDKIPPMSYIVDIASNMQIYPTKDWLVG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain