SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17939

Length: 895 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene17939 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8043	11/13
SustainPine v2.0	sp_v2.0_unigene34814	2/13

Source	Descriptions	Term	Type	Identity
AutoFact	WD-40 repeat-containing protein MSI1 n=8 Tax=core eudicotyledons RepID=MSI1_ARATH	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	multicopy suppressor of ira1	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone acetyltransferase.	EC:2.3.1.48	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	trichome differentiation	GO:0010026	Biological Process	84%
Blast2go	positive regulation of cell cycle	GO:0045787	Biological Process	84%
Blast2go	regulation of flower development	GO:0009909	Biological Process	84%
Blast2go	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	84%
Blast2go	seed coat development	GO:0010214	Biological Process	84%
Blast2go	pollen development	GO:0009555	Biological Process	84%
Blast2go	heterochromatin assembly	GO:0031507	Biological Process	84%
Blast2go	leaf development	GO:0048366	Biological Process	84%
Blast2go	histone acetylation	GO:0016573	Biological Process	84%
Blast2go	cell proliferation	GO:0008283	Biological Process	84%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	84%
Blast2go	protein binding	GO:0005515	Molecular Function	84%
Blast2go	histone acetyltransferase activity	GO:0004402	Molecular Function	84%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	84%
Blast2go	chromatin remodeling complex	GO:0016585	Cellular Component	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAF8

Fln msg: Overlapping hits, possible frame ERROR between 708 and 705, Distance to subject end: 123 aas, your sequence is shorter than subject: 277 - 401

Fln protein: MAMAMGDENAADPVEEFNIWKKNTPFLYDLVITHALEWPSLTVQWLPDRHQSSTADYSLQKMIVGTHTSEDEPNYLMIAEVQIPLQNSEDNIIGGFESTEAKVQIIQKINHEGEVNKARYMPQNSFVIATKTVSSDVYVFDYSKHPSKAPQERVCNPELILKGHSNEGYGLSWSPLKEGHLLSGSNDAQICLWDINAAFGKKVLEANQIFKVHxxxVGDVSWHLKHEYLFGSVGDDCHLLIWDMRTPASNKPQQSVVAHQSEVNSLAFNPFNEWLLA

Protein Length: 278

Fln nts: ATGGGACTGCAATGGTGTGTGCAATAGAATAGAGAAGAAAAGTAGCAGAAGTCAGAGGAAAGC_-_ATGGCGATGGCAATGGGAGACGAAAATGCGGCCGACCCGGTTGAAGAATTCAACATATGGAAGAAGAACACACCCTTCTTATACGATCTAGTGATAACTCATGCGCTGGAATGGCCTTCCCTCACTGTTCAGTGGCTCCCCGACCGCCACCAATCATCCACGGCGGACTACTCCCTGCAGAAAATGATAGTGGGAACTCATACATCAGAGGACGAGCCCAATTATTTGATGATAGCAGAGGTCCAGATTCCCCTGCAAAACTCTGAAGATAACATCATTGGAGGTTTTGAATCCACCGAAGCCAAGGTACAAATAATCCAGAAGATTAATCATGAAGGAGAAGTTAACAAGGCTCGCTACATGCCACAGAATTCATTTGTCATTGCAACGAAGACAGTGAGCTCAGATGTTTATGTGTTTGATTACAGCAAGCATCCATCAAAGGCTCCTCAAGAAAGGGTTTGCAATCCTGAATTGATATTGAAAGGTCATTCTAATGAAGGATATGGTTTGTCGTGGAGCCCTCTCAAAGAAGGTCACCTACTAAGTGGTTCAAATGATGCACAAATATGCTTGTGGGATATAAACGCTGCATTTGGAAAGAAAGTGCTTGAGGCCAATCAAATATTTAAGGTCCATxxxxxxxxxGTTGGGGATGTTTCATGGCATTTGAAGCATGAATACCTTTTTGGCTCTGTTGGAGATGATTGCCATTTGCTCATATGGGACATGCGTACACCTGCATCTAACAAGCCTCAACAATCAGTTGTAGCTCATCAGAGTGAGGTTAACTCTTTGGCCTTTAATCCGTTCAATGAGTGGCTGTTGGCAAC

Fln Alignment:

biogeco2_mira_c16801___MAMAMGDENAADPVEEFNIWKKNTPFLYDLVITHALEWPSLTVQWLPDRHQSSTADYSLQKMIVGTHTSEDEPNYLMIAEVQIPLQNSEDNIIGGFESTEAKVQIIQKINHEGEVNKARYMPQNSFVIATKTVSSDVYVFDYSKHPSKAPQERVCNPELILKGHSNEGYGLSWSPLKEGHLLSGSNDAQICLWDINAAFGKKVLEANQIFKVHExAVGDVSWHLKHEYLFGSVGDDCHLLIWDMRTPASNKPQQSVVAHQSEVNSLAFNPFNEWLLA
D5AAF8__________________MATAMGDENAADPVEEFNIWKKNTPFLYDLVITHALEWPSLTVQWLPDRHQSPTADYSVQKMIVGTHTSEDDPNYLIIAEVQIPLQQSEDNNIGGFESTEAKVQIIQQINHEGEVNKARYMPQNSFVIATKTVSSDVYVFDYSKHPSKAPQERVCNPELILKGHTNEGYGLSWSPLKEGHLLSGSNDAQICLWDINAASGRKVLEANQIFKVHExAVEDVSWHLKHEYLFGSVGDDCHLLIWDMRTAEPNKPQQSVVAHQNEVNSLAFNPFNEWLLA

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
290	33		66		0.997452
378		33		66	0.997476
536		80		20	0.995493
575		33		66	1.0
639	50			50	1.0
826		75		25	0.996473
872		20		80	0.995493
874		20		80	0.995493
876		20		80	0.995493
877		25		75	0.996474
878		25	75		0.996474
881		75		25	0.996479

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain