SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17725

Length: 969 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene17725 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3324	16/16

Source	Descriptions	Term	Type	Identity
AutoFact	[G] COG1472 Beta-glucosidase-related glycosidases	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	beta-xylosidase alpha-l-arabinofuranosidase 2-like	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Starch and sucrose metabolism	00500	75%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	75%
Blast2go	Metabolic pathways	01100	75%

Source	GOs	Term	Type	Identity
Blast2go	xylan catabolic process	GO:0045493	Biological Process	75%
Blast2go	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	75%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	75%
Blast2go	cell wall	GO:0005618	Cellular Component	75%
Blast2go	apoplast	GO:0048046	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Parathyroid hormone/parathyroid hormone-related protein	IPR001415	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABI5

Fln msg: your sequence is shorter than subject: 230 - 304

Fln protein: ARDNPKICGILWVGYPGQAGGDALADILFGQHNPGGRLPVTWYPEEFAIKVPMTNMNMRPDPATGYPGRTYRFYTGNSVYPFGYGLSYTTFSHSLVRAPKLVSLSLHEGLLKSCRGMNTSCASVEVENTKCQGLLFDLHADVHNTGSRDGDHVLLLFASPPAIQGIPQKRLMGFRKVHVGAGGTERVHFSIDVCKDLSVVDGRGVKQLLLGSHLLHVGDTKHTLRVEIE*

Protein Length: 231

Fln nts: GCCAGAGATAATCCGAAGATATGCGGCATTCTGTGGGTGGGATATCCGGGCCAAGCTGGAGGAGATGCATTGGCTGACATACTTTTTGGCCAGCACAATCCAGGTGGGAGATTGCCTGTAACATGGTATCCGGAAGAATTTGCAATAAAAGTACCCATGACAAACATGAACATGCGTCCTGATCCTGCAACTGGTTATCCCGGCCGAACATACAGATTTTACACAGGGAATTCAGTGTACCCATTTGGCTATGGACTGAGTTACACAACATTCTCTCATTCTTTGGTCCGCGCACCAAAGTTGGTTTCATTGTCCCTTCATGAAGGCCTACTTAAGTCATGCCGTGGAATGAACACTTCCTGCGCTTCGGTCGAAGTGGAGAACACCAAGTGCCAGGGATTACTCTTTGATCTTCATGCGGACGTGCATAACACAGGTAGCAGAGATGGAGATCATGTTCTGCTCCTGTTTGCCAGTCCTCCTGCTATTCAGGGAATTCCGCAGAAGCGTCTTATGGGCTTCAGAAAAGTCCATGTTGGTGCAGGAGGCACAGAAAGAGTGCATTTCAGCATTGATGTGTGCAAAGATCTGAGTGTTGTGGATGGGAGAGGTGTGAAGCAATTGCTTTTGGGTTCTCACCTTCTTCATGTTGGTGATACCAAGCATACCCTTCGTGTTGAAATTGAATGA___ATATGCCTCGAAAAGAGTAAGATCCCGAGTGGATTGTCCGACATCAGAGATCAGAGTGAAATTATTGAGCAACGACTCCTAAAAATTGGGTGTGGTTGCTGTGGTGTAGTGTAATAATTTGGAAGCTTGTGCAGGGTTAGGCTAGTGGAAGTTGGTAGAGCTTCATTGTTGCCTCTGCTGGGAAGTCTGCAAAGAGTTCTGACACAACTCTAATTGGAAAAAATTAAGCAGGGTTGGCTCTAAGTGGAAACATGCAGGAGTTTTAGTTCCCCTCTAATT

Fln Alignment:

biogeco2_mira_c15797___ARDNPKICGILWVGYPGQAGGDALADILFGQHNPGGRLPVTWYPEEFAIKVPMTNMNMRPDPATGYPGRTYRFYTGNSVYPFGYGLSYTTFSHSLVRAPKLVSLSLHEGLLKSCRGMNTSCASVEVENTKCQGLLFDLHADVHNTGSRDGDHVLLLFASPPAI-QGIPQKRLMGFRKVHVGAGGTERVHFSIDVCKDLSVVDGRGVKQLLLGSHLLHVGDTKH
D5ABI5__________________AVNDPQISSIIWAGYPGQAGGQALAEIIFGDYNPGGRLPMTWYPQDF-VKIPMTDMNMRPNHDTGYPGRTYRFYTGKKVFEFGQGLSYSAYSYNF-SSTTIQKIDLNVTMEHFEALGNRGKGHVRVENTPCRKLKFRSSIFVRNHDKMDGRHAVLLYSKSPATHKGAPQKQLIGFRSVHVQGKHTAKVTFVVKPCDHFSTVEENGQRLLAIGSHSLIVGDTQY

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
692	80		20		0.995493
723	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain