SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17508

Length: 264 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17508
GATCTGCTTAGGGATGGTACTCCTCGAGGAAGAAGGATGCTGCCACTGCTTATTTAATCTTTCTATTTATCATGACAACAAGGCTCGCATAGTAAGGGCTGGAGCCGTAAAATCTCTTGTTGAGCTGATGGACCCTGCAGCTGGAATGGTAGACAAGGCTGTTGCTGTATTGTCCAATCTTTCAACTATTCCTGAAGGTCGATTTGCAATTGGTGAGGAGGGTGGCATTCCTGCTTTGGTTGAGGTAGTGGAGCTAGGTTCTCA

Ace file of the UniGene biog2_v2.0_unigene17508 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8111	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	U-box multi-domain protein	-	-	3.0e-20	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	protein	-	-	0.0	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	70%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	70%
Blast2go	binding	GO:0005488	Molecular Function	70%
Blast2go	ubiquitin ligase complex	GO:0000151	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	ThiJ/PfpI	IPR002818	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: Distance to subject end: 62 aas, your sequence is shorter than subject: 87 - 497

Fln protein: ICLGMVLLEEEGCCHCLFNLSIYHDNKARIVRAGAVKSLVELMDPAAGMVDKAVAVLSNLSTIPEGRFAIGEEGGIPALVEVVELGS

Protein Length: 88

Fln nts: GATCTGCTTAGGGATGGTACTCCTCGAGGAAGAAGGATGCTGCCACTGCTTATTTAATCTTTCTATTTATCATGACAACAAGGCTCGCATAGTAAGGGCTGGAGCCGTAAAATCTCTTGTTGAGCTGATGGACCCTGCAGCTGGAATGGTAGACAAGGCTGTTGCTGTATTGTCCAATCTTTCAACTATTCCTGAAGGTCGATTTGCAATTGGTGAGGAGGGTGGCATTCCTGCTTTGGTTGAGGTAGTGGAGCTAGGTTCTCA

Fln Alignment:

biogeco2_mira_c15378___EEGCCHCLFNLSIYHDNKARIVRAGAVKSLVELMDPAAGMV-DKAVAVLSNLSTIPEGRFAIGEEGGIPALVEVVELGS
C0PSB5__________________QEHAVTALLNLSIHSSNKGFIVQAGAINRIIDVLKHGSTEARENAAATLFSLSVVDENKVIIGASGAIPPLVDLLRDGT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain