SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17479

Length: 293 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17479
CACCAGTAAAGTCTCATGCTAGACCTTACTGGAATGAATTTGAGAGAATGGCATTGGTGTTTAGGCAGGATTCGCTTGGCGGCTGTGGTATCCAGGTTCCATTTGTCCTTAGAGTACGGAGAGGGCGCCCCAGGAAGAATTGCAGTTCACTTCTGAAAACAAATCCAGTGGGAGAGCTGCCAACCTTGTTAGAAAGAGCTTCATGTACAACCAGCACAATATAGTGGTGACACTGCGGATATGAAACAGATTGTTCCCTTTGGATCAAGTCAGAAGGCTGATTTACACAAAAG

Ace file of the UniGene biog2_v2.0_unigene17479 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3737	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	protein TRF-like 6 [Arabidopsis thaliana] gb\|AEE35355.1\| protein TRF-like 6 [Arabidopsis thaliana]	-	-	30%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	52%
Blast2go	myb family transcription factor	-	-	53%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3		IPR012287	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HXY2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 168 aas, your sequence is shorter than subject: 74 - 682

Fln protein: PVKSHARPYWNEFERMALVFRQDSLGGCGIQVPFVLRVRRGRPRKNCSSLLKTNPVGELPTLLERASCTTSTI*

Protein Length: 75

Fln nts: CACCAGTAAAGTCTCATGCTAGACCTTACTGGAATGAATTTGAGAGAATGGCATTGGTGTTTAGGCAGGATTCGCTTGGCGGCTGTGGTATCCAGGTTCCATTTGTCCTTAGAGTACGGAGAGGGCGCCCCAGGAAGAATTGCAGTTCACTTCTGAAAACAAATCCAGTGGGAGAGCTGCCAACCTTGTTAGAAAGAGCTTCATGTACAACCAGCACAATATAGTGGTGACACTGCGGATATGAAACAGATTGTTCCCTTTGGATCAAGTCAGAAGGCTGATTTACACAAAAG

Fln Alignment:

biogeco2_mira_c15346___KSHARPYWNEF-ERMALVFRQDSLGGCGIQVPFVLRVRRGRPRKNCSSLLK--TNPVGELPTLLERA
F6HXY2__________________KSQARPVRNVCSEGKTVVTRLDSLGGSGVQVPYVFRVRRSRPRKNFMALMKFNTNSMGMAAKLVKKA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain