SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17227

Length: 481 nt

UniGene Fasta

>biog2_v2.0_unigene17227
GTGGAAAGAAAACCAGTGATACAAACCTTCCCGATGAAATGCAAAGCCTCTTAGAATGGGCATGGATATCATACAAGCGAGGGTGTCTTCCGAATATGATAGATTCGACATTGGCAGAAACAATCAGGCTGGAGCAAGCTTTAAGATGCATCCAGGTTGGGCTTCTATGCACGCAAGCTGATGCAGGCCTCCGTCCAATTATGTCTACTGTTATATTGATGATCTCCAGTGCTTCTGTGACATTAGCAAATCCAACAAAGCCCGCATTTGTGAAAAGTAGTGACAGCTCCCGTGGAGGATCTACAGCCACCAGCTCTAGCAGTAACATTCAGCAGTCACGGTCCTCTGCCACCGCATCATCTGTGTCGTCTGCCTCTACACAGGGTCCTTTGGTTCCTTCCATAAATGATGTCACCATCAGTGAATTGGACGCTAGGTAGGCAGGGAAACTTCTTAGTTCATTGTAAATAACGCGTAGTGT

Ace file of the UniGene biog2_v2.0_unigene17227

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11823	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	cysteine-rich receptor-like protein kinase 29 [Arabidopsis thaliana] sp\|Q8S9L6.1\|CRK29_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 29; Short=Cysteine-rich RLK29; Flags: Precursor gb\|AAL75897.1\| AT4g21410/T6K22_140 [Arabidopsis thaliana]	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	cysteine-rich receptor-like protein kinase 10-like	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	72%
Blast2go	ATP binding	GO:0005524	Molecular Function	72%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	72%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR011523	-	-
Sma3		IPR012335	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQB9

Fln msg: your sequence is shorter than subject: 146 - 290

Fln protein: GKKTSDTNLPDEMQSLLEWAWISYKRGCLPNMIDSTLAETIRLEQALRCIQVGLLCTQADAGLRPIMSTVILMISSASVTLANPTKPAFVKSSDSSRGGSTATSSSSNIQQSRSSATASSVSSASTQGPLVPSINDVTISELDAR*

Protein Length: 147

Fln nts: GTGGAAAGAAAACCAGTGATACAAACCTTCCCGATGAAATGCAAAGCCTCTTAGAATGGGCATGGATATCATACAAGCGAGGGTGTCTTCCGAATATGATAGATTCGACATTGGCAGAAACAATCAGGCTGGAGCAAGCTTTAAGATGCATCCAGGTTGGGCTTCTATGCACGCAAGCTGATGCAGGCCTCCGTCCAATTATGTCTACTGTTATATTGATGATCTCCAGTGCTTCTGTGACATTAGCAAATCCAACAAAGCCCGCATTTGTGAAAAGTAGTGACAGCTCCCGTGGAGGATCTACAGCCACCAGCTCTAGCAGTAACATTCAGCAGTCACGGTCCTCTGCCACCGCATCATCTGTGTCGTCTGCCTCTACACAGGGTCCTTTGGTTCCTTCCATAAATGATGTCACCATCAGTGAATTGGACGCTAGGTAG___GCAGGGAAACTTCTTAGTTCATTGTAAATAACGCGTAGTGT

Fln Alignment:

biogeco2_mira_c15027___GKKTSDTNLPDEMQSLLEWAWISYKRGCLPNMIDSTLAETIRLEQALRCIQVGLLCTQADAGLRPIMSTVILMISSASVTLANPTKPAFV
A9NQB9__________________GRRNTDIRLPQEQQILLEWGWRLCNGENLLNMIDPTIVGCCPQEQALRCIQVGLLCVQADVVNRPAMSDVVLMLSANSMGIPNPTKPAFV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain