SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16803

Length: 381 nt

UniGene Fasta

>biog2_v2.0_unigene16803
ATGGGGAGCACGCCGAGGAGCGCGTGTACGCCTTTCCAATGCATGCAGACTGGTTTTCACTTAACACTGTGCATAGAATGGAGCGACAACTAGTTCCAGAGTATTTTACTGGGAAGTCTAGTGAGCGGACGCCAAAAGTATACATGGAACTCAGAAACACTATTGTTAGGAAGTATTTGGAAAATCCGGAAAGTGCTCTGTCATTAACTGATATTCAGGGACTGGCTAATTTAGACACAAAATATTTGTCTAGGATTTTTGAGTTTCTAGATCATTGGGGCATCATAAACTACAGCGCAACAAATGATCCAAGGAATAATGGAACTTCATGCGCAGAAGCTAAAGAGATTTTACAGGAGAACACAAATGGAGAGGTACAAA

Ace file of the UniGene biog2_v2.0_unigene16803

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene33475	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SWI/SNF complex subunit SWI3C [Arabidopsis thaliana] sp\|Q9XI07.1\|SWI3C_ARATH RecName: Full=SWI/SNF complex subunit SWI3C; Short=AtSWI3C; AltName: Full=Transcription regulatory protein SWI3C gb\|AAD41423.1\|AC007727_12 Contains similarity to gb\|AF033823 moir	-	-	2.99878e-43	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	swi snf complex subunit swi3c-like	-	-	0.0	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, ZZ-type	IPR000433	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	SWIRM domain	IPR007526	-	-
Sma3		IPR014778	-	-
Sma3	SANT domain	IPR017884	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWA4

Fln msg: Distance to subject end: 266 aas, your sequence is shorter than subject: 126 - 447

Fln protein: GEHAEERVYAFPMHADWFSLNTVHRMERQLVPEYFTGKSSERTPKVYMELRNTIVRKYLENPESALSLTDIQGLANLDTKYLSRIFEFLDHWGIINYSATNDPRNNGTSCAEAKEILQENTNGEVQ

Protein Length: 127

Fln nts: ATGGGGAGCACGCCGAGGAGCGCGTGTACGCCTTTCCAATGCATGCAGACTGGTTTTCACTTAACACTGTGCATAGAATGGAGCGACAACTAGTTCCAGAGTATTTTACTGGGAAGTCTAGTGAGCGGACGCCAAAAGTATACATGGAACTCAGAAACACTATTGTTAGGAAGTATTTGGAAAATCCGGAAAGTGCTCTGTCATTAACTGATATTCAGGGACTGGCTAATTTAGACACAAAATATTTGTCTAGGATTTTTGAGTTTCTAGATCATTGGGGCATCATAAACTACAGCGCAACAAATGATCCAAGGAATAATGGAACTTCATGCGCAGAAGCTAAAGAGATTTTACAGGAGAACACAAATGGAGAGGTACAAA

Fln Alignment:

biogeco2_mira_c14503___VYAFPMHADWFSLNTVHRMERQLVPEYFTGKSSERTPKVYMELRNTIVRKYLENPESALSLTDIQGLANLDTKYLSRIFEFLDHWGIINYSATNDPRN
A9NWA4__________________IYKIPKYSSWFAWDKIHGTERRFLPEFFDEKSAAKTPKVYKEYRDFIINRYRKNPHKRISFTEVRKMLVGDVNSIRRVFDFLDNWGLINYQVASSKQH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain