SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16746

Length: 250 nt

UniGene Fasta

>biog2_v2.0_unigene16746
TTAAAGCTCAGAAACTATTTTCTGAGCCAAAGAGGATTGCAGAGAAGTATCCTGTTGGTGATGCTAGTGATATTAAGAAGAGACATATGGTTTGTCTTAACTGGTTGCTCTCTGACCAGCCACTTGATCTGGAGACTGAGTTGGCACTTGGCTTTTTAGATCATCTCATGTTGGGAACCCCTGCTGCACCCCTTAGAAGAGCTCTTCTGGAGAGTGGCTTGGGGGATGCCATTGTGGGAAGTGGAATTGA

Ace file of the UniGene biog2_v2.0_unigene16746

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene603	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	presequence protease 2 [Arabidopsis thaliana] ref\|NP_850961.1\| presequence protease 2 [Arabidopsis thaliana] ref\|NP_850962.1\| presequence protease 2 [Arabidopsis thaliana] sp\|Q8VY06.1\|PREP2_ARATH RecName: Full=Presequence protease 2, chloroplastic/mitocho	-	-	80%
FL-Next	sp=Presequence protease 2, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	76%
Blast2go	presequence protease 2	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	87%
Blast2go		GO:0051605	Biological Process	87%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	87%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	87%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%
Blast2go	apoplast	GO:0048046	Cellular Component	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Peptidase M16, zinc-binding site	IPR001431	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Peptidase M16, C-terminal	IPR007863	-	-
Sma3	Peptidase M16, core	IPR011237	-	-
Sma3	Peptidase M16, N-terminal	IPR011765	-	-
Sma3	Peptidase M16C associated	IPR013578	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8VY06

Fln msg: Distance to subject end: 643 aas, your sequence is shorter than subject: 82 - 1080

Fln protein: KAQKLFSEPKRIAEKYPVGDASDIKKRHMVCLNWLLSDQPLDLETELALGFLDHLMLGTPAAPLRRALLESGLGDAIVGSGI

Protein Length: 83

Fln nts: TTAAAGCTCAGAAACTATTTTCTGAGCCAAAGAGGATTGCAGAGAAGTATCCTGTTGGTGATGCTAGTGATATTAAGAAGAGACATATGGTTTGTCTTAACTGGTTGCTCTCTGACCAGCCACTTGATCTGGAGACTGAGTTGGCACTTGGCTTTTTAGATCATCTCATGTTGGGAACCCCTGCTGCACCCCTTAGAAGAGCTCTTCTGGAGAGTGGCTTGGGGGATGCCATTGTGGGAAGTGGAATTGA

Fln Alignment:

biogeco2_mira_c14437___QKLFSEPKRIAEKYPVGDASDIKKRHMVCLNWLLSDQPLDLETELALGFLDHLMLGTPAAPLRRALLESGLGDAIVGSGI
Q8VY06__________________QKLFSRPRRIVEKYPAGEDGDLKKKHMVCLNWLLSDKPLDLQTQLALGFLDHLMLGTPASPLRKILLESGLGEALVNSGM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain