SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16197

Length: 271 nt

UniGene Fasta

>biog2_v2.0_unigene16197
GGTGGTTCCTGTGGAGCTATGTCCCCATTCTTAAGACTCTGTACAATATCCTTATAAAAAGGGAGCATCAGCAGAAGCTATATTACAAGCCTTGAGAGATGAGAATATGTATGATCCGCGTCATCGTATTGAGATTGCTTCAGTAAATAATGCTCCATGCTTCAGTTGCCATGCACTCCGAAGACAGTCCAACTTGACCAGGGAGTCAATTCTAGAGTGTTAAGATTATAAATTACGATATTTTGTGACGGGGTGTTAATGTCGTCAGAGA

Ace file of the UniGene biog2_v2.0_unigene16197

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20313	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative glycerol-3-phosphate dehydrogenase [Oryza sativa Japonica Group] gb\|EAY77165.1\| hypothetical protein OsI_05133 [Oryza sativa Indica Group] dbj\|BAG90969.1\| unnamed protein product [Oryza sativa Japonica Group] gb\|EEE55980.1\| hypothetical protein O	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	glycerol-3-phosphate dehydrogenase	-	-	90%

Source	InterPros	Term	Type	Identity
Sma3	Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal	IPR006109	-	-
Sma3	Glycerol-3-phosphate dehydrogenase, NAD-dependent	IPR006168	-	-
Sma3	Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal	IPR011128	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAK9

Fln msg: your sequence is shorter than subject: 74 - 393

Fln protein: VVPVELCPHS*DSVQYPYKKGASAEAILQALRDENMYDPRHRIEIASVNNAPCFSCHALRRQSNLTRESILEC*

Protein Length: 75

Fln nts: GGTGGTTCCTGTGGAGCTATGTCCCCATTCTTAAGACTCTGTACAATATCCTTATAAAAAGGGAGCATCAGCAGAAGCTATATTACAAGCCTTGAGAGATGAGAATATGTATGATCCGCGTCATCGTATTGAGATTGCTTCAGTAAATAATGCTCCATGCTTCAGTTGCCATGCACTCCGAAGACAGTCCAACTTGACCAGGGAGTCAATTCTAGAGTGTTAA___GATTATAAATTACGATATTTTGTGACGGGGTGTTAATGTCGTCAGAGA

Fln Alignment:

biogeco2_mira_c13762___VVPVELCPHS*DSVQYPYKKGASAEAILQALRDENMYDPRHRIEIA
D5AAK9__________________VAPVELCPILKTLYSILITRDSSTHAILQALRDETMHDPRERIEIA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain