SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15703

Length: 478 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene15703
GGAAGCACCTGACTTCGATCAAAATATTCTTGGAGAACCTGGTAAAGCAGCTGTTGGAAAACCAGGAGGCCTTGCATATTAAGTTTCTGGAGGCCATAGAACGCCGAGATCAAGAAAGGATAATGAGGGAAGAGGCCTGGAAACGCCAAGAAATGGCGCGTTTAACAAGGGAAACGGAATTGCGGGCTCAGGAGCACGCTCTTGCCTCGACGCGAGAGGCCGCCATTGTTGCGTTTTTGCAGAAGATTACCGGTGAAGACTTGAAGCTCCCTGAAGCGCCGGTGCCATTTCACGCTACAGAAACTCAGGAAGATCACCAGGCAGCTTGTATGGATAAAGACCTTTCCGATCCCAACGGGAAGAGATGGCCTAAGCCTGAAGTCCAAGCTTTGATTCGCTTACGCAGTAATTTGGAGCCCAAATTTCAAGAGCCGGGGCCGAAAGGGCCGCTTTGGCAGGAGATATCAGCCGGAATGGC

Ace file of the UniGene biog2_v2.0_unigene15703 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3714	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MFAP1_C domain containing protein	-	-	0.0001	23%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	24%
Blast2go	protein	-	-	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	MADF domain	IPR006578	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Myb-like domain	IPR017877	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NRE1

Fln msg: Distance to subject end: 54 aas, your sequence is shorter than subject: 158 - 378

Fln protein: KHLTSIKIFLENLVKQLLENQEALHIKFLEAIERRDQERIMREEAWKRQEMARLTRETELRAQEHALASTREAAIVAFLQKITGEDLKLPEAPVPFHATETQEDHQAACMDKDLSDPNGKRWPKPEVQALIRLRSNLEPKFQEPGPKGPLWQEISAGM

Protein Length: 159

Fln nts: GGAAGCACCTGACTTCGATCAAAATATTCTTGGAGAACCTGGTAAAGCAGCTGTTGGAAAACCAGGAGGCCTTGCATATTAAGTTTCTGGAGGCCATAGAACGCCGAGATCAAGAAAGGATAATGAGGGAAGAGGCCTGGAAACGCCAAGAAATGGCGCGTTTAACAAGGGAAACGGAATTGCGGGCTCAGGAGCACGCTCTTGCCTCGACGCGAGAGGCCGCCATTGTTGCGTTTTTGCAGAAGATTACCGGTGAAGACTTGAAGCTCCCTGAAGCGCCGGTGCCATTTCACGCTACAGAAACTCAGGAAGATCACCAGGCAGCTTGTATGGATAAAGACCTTTCCGATCCCAACGGGAAGAGATGGCCTAAGCCTGAAGTCCAAGCTTTGATTCGCTTACGCAGTAATTTGGAGCCCAAATTTCAAGAGCCGGGGCCGAAAGGGCCGCTTTGGCAGGAGATATCAGCCGGAATGGC

Fln Alignment:

biogeco2_mira_c13161___LENLVKQLLENQEALHIKFLEAIERRDQERIMREEAWKRQEMARLTRETELRAQEHALASTREAAIVAFLQKITGEDLKL----PEAPVPFHATETQEDHQAACMDKDLSDPNG------KRWPKPEVQALIRLRSNLEPKFQEPGPKGPLWQEIS
A9NRE1__________________VRELLESLVNRQQRFFVDLLESIERKEEIR----------ERIRQEKEEKWRAEERAQRCLFNNAMIVLAKKLVDGDPGFCGFEEFKPKPTTGGSEQTDHDAGAAAITVVGGGGGPKKRSKNWKRAEVLRLIKFRAEMESRFAKSARRAALWEELA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
305		33		66	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain