SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15559

Length: 500 nt

UniGene Fasta

>biog2_v2.0_unigene15559
ATGGGGCTCACCCGATTTTCCACGGATTGACTGCTTTCTGTATTTTATTCTTCACAAGAGTTCTCTTTCGCGCCTCTGTGGTTTCATGAAGAAGTGATCTTTCCTCCCAAAGTAATTTGCAGAAAGTTTGCACCAAGTTAGTGGATATGTTTTGAAGCACTTGAACGAAATGCAGCTGTATCAACATCCTTACTCATTAGATAGTCAGAAAGTGCGGCTTGCTCTTGAGGAGAAAGGCCTAGATTACTGGCCATACAGCATCAATCCTCTGAAGGCGAAGAACCTAGATTCAAGAATTTTCGCATGAACCCAACTGGCAAACTACCTGTATTCCTGAATGGTCAACATATTATTTTTGACACACTTTCCATTCTTCAGTATATTGATAGCATACATGAACCATTAGGGGGTGATGCTGTGGACCGCGAGAAAATGCTACTATGGATGCGGTCGATAGATTCCTGGAATCCAAAGCTATTTACTCTTAGCCATGTTCCTCA

Ace file of the UniGene biog2_v2.0_unigene15559

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6088	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[O] COG0625 Glutathione S-transferase	-	-	5.0e-06	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	glutathione s-transferase-like protein	-	-	0.0	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACH8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 155 aas, your sequence is shorter than subject: 46 - 266

Fln protein: MQLYQHPYSLDSQKVRLALEEKGLDYWPYSINPLKAKNLDSRIFA*

Protein Length: 47

Fln nts: ATGGGGCTCACCCGATTTTCCACGGATTGACTGCTTTCTGTATTTTATTCTTCACAAGAGTTCTCTTTCGCGCCTCTGTGGTTTCATGAAGAAGTGATCTTTCCTCCCAAAGTAATTTGCAGAAAGTTTGCACCAAGTTAGTGGATATGTTTTGAAGCACTTGAACGAA_-_ATGCAGCTGTATCAACATCCTTACTCATTAGATAGTCAGAAAGTGCGGCTTGCTCTTGAGGAGAAAGGCCTAGATTACTGGCCATACAGCATCAATCCTCTGAAGGCGAAGAACCTAGATTCAAGAATTTTCGCATGAACCCAACTGGCAAACTACCTGTATTCCTGAATGGTCAACATATTATTTTTGACACACTTTCCATTCTTCAGTATATTGATAGCATACATGAACCATTAGGGGGTGATGCTGTGGACCGCGAGAAAATGCTACTATGGATGCGGTCGATAGATTCCTGGAATCCAAAGCTATTTACTCTTAGCCATGTTCCTCA

Fln Alignment:

biogeco2_mira_c12990___MQLYQHPYSLDSQKVRLALEEKGLDYWPYSINPLKAKNLDSRIF
D5ACH8__________________MEFHYHPLSLDCQKVCLVMEEKNTKYIPHLVNPFKARNLDAEFF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain