SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15500

Length: 139 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene15500
GGGTAGCCAATCTAATGAGCAAATGGTTTGGGGATTCTCAGAACTTGTGACTGCTGTGTTCACACTTGCACAGAAGCTTCAACCTGCTATCATATTTCTTGATGAGGTCGATAGTTTTTTGGGGCAGCGCCGTTCTACT

Ace file of the UniGene biog2_v2.0_unigene15500 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20780	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	[O] COG0464 ATPases of the AAA+ class	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	83%
Blast2go	Thiamine metabolism	00730	83%
Blast2go	Metabolic pathways	01100	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	-
Sma3		IPR001984	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	Thiamin pyrophosphokinase	IPR006282	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	-
Sma3	MIT	IPR007330	-	-
Sma3	Thiamin pyrophosphokinase, catalytic domain	IPR007371	-	-
Sma3	Thiamin pyrophosphokinase, vitamin B1-binding domain	IPR007373	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	DNA mismatch repair protein, C-terminal	IPR013507	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	MutL, C-terminal, dimerisation	IPR014790	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3		IPR015706	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AE60

Fln msg: Overlapping hits, possible frame ERROR between 47 and 41, Distance to subject end: 192 aas, your sequence is shorter than subject: 46 - 388

Fln protein: VANLMSKWFGDSxxxxTAVFTLAQKLQPAIIFLDEVDSFLGQRRST

Protein Length: 47

Fln nts: GGGTAGCCAATCTAATGAGCAAATGGTTTGGGGATTCTxxxxxxxxxxxxACTGCTGTGTTCACACTTGCACAGAAGCTTCAACCTGCTATCATATTTCTTGATGAGGTCGATAGTTTTTTGGGGCAGCGCCGTTCTACT

Fln Alignment:

biogeco2_mira_c12919___VANLMSKWFGDSQxxVTAVFTLAQKLQPAIIFLDEVDSFLGQRRST
D5AE60__________________VANLMSKWFGDSQxxVTAVFTLAQKLQPAIIFLDEVDSFLGQRRSS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain